RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Shisa2Q8QZV2 295 aa9.25□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Timm17bQ9Z0V7 172 aa9.25□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Rnase1P00683 149 aa9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Defb12Q8K4N3 78 aa9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Rbm3O89086 153 aaKnown RBP9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 BC025920Q3US60 128 aa9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Ighv1-5A0A0A6YWG2 117 aa9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Pet100P0DJE0 76 aa9.24□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Fgfbp3Q1HCM0 245 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Sfta2E9PXB6 77 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Tmem254aP0DN89 123 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Tmem254bP0DN90 123 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Tmem254cP0DN91 123 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Tm2d2Q8R0I4 213 aa9.23□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Gm10509O88255 85 aa9.22□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Prr13Q9CQJ5 137 aa9.22□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Wfdc12Q9JHY3 85 aa9.22□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Cep192E9Q4Y4 2514 aaKnown RBP9.22□□□□□ -0.93
Clcn3-201ENSMUST00000004430 EnhoQ8K1D8 76 aa9.22□□□□□ -0.93
Clcn3-201ENSMUST00000004430 ScxQ64124 207 aa9.21□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Lama5Q61001 3718 aa9.21□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Acyp1P56376 99 aa9.21□□□□□ -0.93
Clcn3-201ENSMUST00000004430 Rpl18aP62717 176 aaKnown RBP9.21□□□□□ -0.94
Clcn3-201ENSMUST00000004430 A0A286YCN5 57 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 CrygdP04342 174 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Psmb8P28063 276 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 FshbQ60687 130 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Wfdc15aQ8BH89 80 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Ighv1-61P01749 117 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 A930009A15RikG3UYI6 118 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Inafm2A0A1L1STD6 152 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Psmb11Q8BG41 302 aa9.2□□□□□ -0.94
Clcn3-201ENSMUST00000004430 A0A286YE02 88 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 GfyJ3KML8 504 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Gm9747Q810H1 104 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 4930564D02RikQ9D4S4 103 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Znf580Q9DB38 172 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Ighv1-63A0A075B5X2 117 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Ormdl1Q921I0 153 aa9.19□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Igkv3-2A0A075B5P0 119 aa9.18□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Lyrm9Q3UN90 78 aa9.18□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Cdc42se2Q8BGH7 84 aa9.18□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Trav9n-4A0A075B631 113 aa9.18□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Sslp1Q3UN54 99 aa9.17□□□□□ -0.94
Clcn3-201ENSMUST00000004430 4930524J08RikQ9CUJ5 163 aa9.17□□□□□ -0.94
Clcn3-201ENSMUST00000004430 3110070M22RikQ9DAQ7 118 aa9.16□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Smr3aQ61900 147 aa9.16□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Gm10300Q8C8P7 189 aa9.15□□□□□ -0.94
Clcn3-201ENSMUST00000004430 Igkv8-34A0A0G2JDU0 121 aa9.15□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Gm10322F7D7I4 111 aa9.15□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Higd2aQ9CQJ1 106 aa9.15□□□□□ -0.95
Clcn3-201ENSMUST00000004430 NbeaQ9EPN1 2936 aa9.14□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Igkv4-58A0A0G2JGI6 119 aa9.14□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Apoc4Q61268 124 aa9.14□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Ppp1r32Q148A4 427 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Eif4ebp1Q60876 117 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Zfhx3Q61329 3726 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Krtap27-1E9PX37 202 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Gm9887F6RFI0 207 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Eif4ebp3Q80VV3 101 aa9.13□□□□□ -0.95
Clcn3-201ENSMUST00000004430 AI854703Q8BIN3 203 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Sostdc1Q9CQN4 206 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Spata25Q9DA57 226 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Trbv13-2A0A140T8N6 113 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Gm3443F7CCV5 94 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Gm10577Q3UDV9 132 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 BC048502Q80Y74 154 aa9.12□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Ly6gP35461 111 aa9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Pla2g1bQ9Z0Y2 146 aa9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Tfpi2O35536 230 aa9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Cmc4Q61908 68 aa9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Igkv1-117A0A140T8M0 119 aa9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Tmem223Q9CQE2 199 aaKnown RBP9.11□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Igkv8-18A0A0B4J1J3 123 aa9.1□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Defb2P82020 71 aa9.1□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Serp2Q6TAW2 65 aa9.1□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Defb42Q8BVB5 75 aa9.1□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Ufsp1Q9CZP0 217 aa9.1□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Spink8Q09TK9 105 aa9.09□□□□□ -0.95
Clcn3-201ENSMUST00000004430 Gm5142Q8C5X9 133 aa9.09□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Ube2d4D3YUH6 135 aa9.08□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Gm17577J3QNF7 156 aa9.08□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Rnf152Q8BG47 203 aa9.08□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Ly6c2P0CW03 131 aa9.07□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Fam19a1Q7TPG8 133 aa9.07□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Gm8439G3UWA7 96 aa9.07□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Camk2n2Q78WH7 79 aa9.07□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Rpl28P41105 137 aaKnown RBP9.06□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Plac8l1Q08EJ0 177 aa9.06□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Gm9805F6YK59 57 aa9.06□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Igfn1Q3KNY0 2849 aa9.06□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Prr15lQ8JZM2 100 aa9.05□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Reg3bP35230 175 aa9.05□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Gm9922Q8C3P1 144 aa9.05□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Notch1Q01705 2531 aa9.04□□□□□ -0.96
Clcn3-201ENSMUST00000004430 4930546C10RikE9Q4Y3 121 aa9.04□□□□□ -0.96
Clcn3-201ENSMUST00000004430 P06329 120 aa9.04□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Klk11Q9QYN3 276 aa9.04□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Igkv8-26A0A075B5N5 123 aa9.04□□□□□ -0.96
Clcn3-201ENSMUST00000004430 Lelp1Q9DAE3 120 aa9.04□□□□□ -0.96
Retrieved 100 of 22,080 RNA–protein pairs in 57.3 ms