RNA–Protein interactions for RNA: YJL033W

HCA4, Transcript of DEAD box RNA helicase, yeast

Gene HCA4, Length 2,313 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HCA4	YJL033W	YRF1-2	P40105	1681 aa		4.17	□□□□□ -1.74
HCA4	YJL033W	LYS2	P07702	1392 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	KCC4	P25389	1037 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	DMC1	P25453	334 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	NUF2	P33895	451 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	YJL206C	P39529	758 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	IAH1	P41734	238 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	ENP2	P48234	707 aa	Known RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	TLG1	Q03322	224 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	PDR18	P53756	1333 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	RNR2	P09938	399 aa	Known RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	PET123	P17558	318 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	YMR124W	P39523	943 aa	Known RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	GPP2	P40106	250 aa	Known RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	CTK3	P46963	296 aa	Predicted RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	MPS3	P47069	682 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	RFX1	P48743	811 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	TAF4	P50105	388 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	VID30	P53076	958 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	RRB1	Q04225	511 aa	Known RBP	4.16	□□□□□ -1.74
HCA4	YJL033W	RIM20	Q12033	661 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	NFI1	Q12216	726 aa		4.16	□□□□□ -1.74
HCA4	YJL033W	SWI1	P09547	1314 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	AEP2	P22136	580 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	MBR1	P23493	339 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	CDC60	P26637	1090 aa	Known RBP	4.15	□□□□□ -1.74
HCA4	YJL033W	CTP1	P38152	299 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	NPR3	P38742	1146 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	RNR4	P49723	345 aa	Known RBP	4.15	□□□□□ -1.74
HCA4	YJL033W	SKY1	Q03656	742 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	ARO80	Q04052	950 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	TAF3	Q12297	353 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	TMA17	Q12513	150 aa		4.15	□□□□□ -1.74
HCA4	YJL033W	GFA1	P14742	717 aa	Known RBP	4.15	□□□□□ -1.75
HCA4	YJL033W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
HCA4	YJL033W	OSM1	P21375	501 aa	Known RBP	4.15	□□□□□ -1.75
HCA4	YJL033W	MRPS28	P21771	286 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	HEL1	P36113	551 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	AAP1	P37898	856 aa	Known RBP	4.15	□□□□□ -1.75
HCA4	YJL033W	TOM71	P38825	639 aa	Known RBP	4.15	□□□□□ -1.75
HCA4	YJL033W	YMR147W	P40218	223 aa	Known RBP	4.15	□□□□□ -1.75
HCA4	YJL033W	KHA1	P40309	873 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	CTF18	P49956	741 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	YGR151C	P53287	111 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	YDL086W	Q07505	273 aa		4.15	□□□□□ -1.75
HCA4	YJL033W	SSK22	P25390	1331 aa	Predicted RBP	4.14	□□□□□ -1.75
HCA4	YJL033W	SSB1	P11484	613 aa	Known RBP	4.14	□□□□□ -1.75
HCA4	YJL033W	FUB1	P25659	250 aa		4.14	□□□□□ -1.75
HCA4	YJL033W	YBR071W	P38243	211 aa		4.14	□□□□□ -1.75
HCA4	YJL033W	UBS1	P38290	277 aa		4.14	□□□□□ -1.75
HCA4	YJL033W	SSB2	P40150	613 aa	Known RBP	4.14	□□□□□ -1.75
HCA4	YJL033W	YOR389W	Q08912	624 aa		4.14	□□□□□ -1.75
HCA4	YJL033W	YPR027C	Q12079	277 aa		4.14	□□□□□ -1.75
HCA4	YJL033W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
HCA4	YJL033W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
HCA4	YJL033W	CDC26	P14724	124 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	FRS2	P15625	503 aa	Known RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	HCA4	P20448	770 aa	Known RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	PRE4	P30657	266 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	MF(ALPHA)2	P32435	120 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	DAL3	P32459	195 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	SET3	P36124	751 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	CCT7	P42943	550 aa	Known RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	NIT2	P47016	307 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	VPS73	P53142	486 aa	Known RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	RBA50	Q04418	439 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	CMS1	Q07897	291 aa	Known RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	ARD1	P07347	238 aa	Predicted RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	CDC16	P09798	840 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	RAD16	P31244	790 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	DGR2	P32330	852 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	GCD7	P32502	381 aa	Predicted RBP	4.13	□□□□□ -1.75
HCA4	YJL033W	GMH1	P36125	273 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	SEC9	P40357	651 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	AIM20	P40451	204 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	SDH5	Q08230	162 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	ENT1	Q12518	454 aa		4.13	□□□□□ -1.75
HCA4	YJL033W	URB1	P34241	1764 aa	Known RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	IMP2'	P32351	346 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	MSS1	P32559	526 aa	Predicted RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
HCA4	YJL033W	APL3	P38065	1025 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	SPT8	P38915	602 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	PEA2	P40091	420 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	EPL1	P43572	832 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	JJJ1	P53863	590 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	RUD3	Q12234	484 aa	Known RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	HIF1	Q12373	385 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	SMC6	Q12749	1114 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	TOM1	Q03280	3268 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	CDC37	P06101	506 aa	Known RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	SER1	P33330	395 aa	Known RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	YKL133C	P36066	463 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	TDP1	P38319	544 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	YHR097C	P38809	366 aa	Known RBP	4.12	□□□□□ -1.75
HCA4	YJL033W	SPC105	P53148	917 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	UBP16	Q02863	499 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	FDC1	Q03034	503 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	TAD3	Q9URQ3	322 aa		4.12	□□□□□ -1.75
HCA4	YJL033W	PRP16	P15938	1071 aa	Predicted RBP	4.11	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms