RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W KAP123P40069 1113 aaKnown RBP3.74□□□□□ -1.81
UPF3YGR072W FTR1P40088 404 aa3.74□□□□□ -1.81
UPF3YGR072W PSF2P40359 213 aa3.74□□□□□ -1.81
UPF3YGR072W IMA5P40884 581 aa3.74□□□□□ -1.81
UPF3YGR072W TRS130Q03660 1102 aa3.74□□□□□ -1.81
UPF3YGR072W IRC3Q06683 689 aa3.74□□□□□ -1.81
UPF3YGR072W PFK2P16862 959 aaKnown RBP RIP-Chip data3.73□□□□□ -1.81not detected
UPF3YGR072W ARG1P22768 420 aa3.73□□□□□ -1.81
UPF3YGR072W CLB4P24871 460 aa3.73□□□□□ -1.81
UPF3YGR072W YCL049CP25577 312 aa3.73□□□□□ -1.81
UPF3YGR072W BEM3P32873 1128 aa3.73□□□□□ -1.81
UPF3YGR072W DHR2P36009 735 aaPredicted RBP3.73□□□□□ -1.81
UPF3YGR072W CDS1P38221 457 aa3.73□□□□□ -1.81
UPF3YGR072W NPR3P38742 1146 aa3.73□□□□□ -1.81
UPF3YGR072W CRG1P38892 291 aaRIP-Chip data3.73□□□□□ -1.81not detected
UPF3YGR072W UME6P39001 836 aa3.73□□□□□ -1.81
UPF3YGR072W ERP2P39704 215 aa3.73□□□□□ -1.81
UPF3YGR072W SPC72P39723 622 aa3.73□□□□□ -1.81
UPF3YGR072W VFA1P40080 203 aa3.73□□□□□ -1.81
UPF3YGR072W CAB2P40506 365 aa3.73□□□□□ -1.81
UPF3YGR072W ERR3P42222 437 aa3.73□□□□□ -1.81
UPF3YGR072W GSM1P42950 618 aa3.73□□□□□ -1.81
UPF3YGR072W DAK1P54838 584 aaKnown RBP3.73□□□□□ -1.81
UPF3YGR072W GTR1Q00582 310 aa3.73□□□□□ -1.81
UPF3YGR072W SSP2Q08646 371 aa3.73□□□□□ -1.81
UPF3YGR072W NEW1Q08972 1196 aaKnown RBP3.73□□□□□ -1.81
UPF3YGR072W FRE7Q12333 620 aa3.73□□□□□ -1.81
UPF3YGR072W VPS33P20795 691 aa3.72□□□□□ -1.81
UPF3YGR072W SWC3P31376 625 aa3.72□□□□□ -1.81
UPF3YGR072W SLC1P33333 303 aa3.72□□□□□ -1.81
UPF3YGR072W RRN3P36070 627 aa3.72□□□□□ -1.81
UPF3YGR072W YJL193WP39542 402 aa3.72□□□□□ -1.81
UPF3YGR072W TMN3P40071 706 aa3.72□□□□□ -1.81
UPF3YGR072W IRC8P47046 822 aa3.72□□□□□ -1.81
UPF3YGR072W SAP4P53036 818 aa3.72□□□□□ -1.81
UPF3YGR072W ATP23P53722 227 aa3.72□□□□□ -1.81
UPF3YGR072W ATG21Q02887 496 aa3.72□□□□□ -1.81
UPF3YGR072W SVL3Q03088 825 aaKnown RBP3.72□□□□□ -1.81
UPF3YGR072W TRS23Q03784 219 aa3.72□□□□□ -1.81
UPF3YGR072W VPS64Q03944 604 aa3.72□□□□□ -1.81
UPF3YGR072W EIS1Q05050 843 aaKnown RBP3.72□□□□□ -1.81
UPF3YGR072W CIA1Q05583 330 aa3.72□□□□□ -1.81
UPF3YGR072W COG4Q06096 861 aa3.72□□□□□ -1.81
UPF3YGR072W MTF2P10849 440 aa3.71□□□□□ -1.82
UPF3YGR072W TUP1P16649 713 aa3.71□□□□□ -1.82
UPF3YGR072W PMA2P19657 947 aa3.71□□□□□ -1.82
UPF3YGR072W CHS3P29465 1165 aa3.71□□□□□ -1.82
UPF3YGR072W RAD16P31244 790 aa3.71□□□□□ -1.82
UPF3YGR072W RPN12P32496 274 aa3.71□□□□□ -1.82
UPF3YGR072W PUG1P40100 303 aa3.71□□□□□ -1.82
UPF3YGR072W YDL183CP48569 320 aa3.71□□□□□ -1.82
UPF3YGR072W ACS1Q01574 713 aa3.71□□□□□ -1.82
UPF3YGR072W UBC1P21734 215 aaKnown RBP3.7□□□□□ -1.82
UPF3YGR072W MCM10P32354 571 aa3.7□□□□□ -1.82
UPF3YGR072W EHT1P38295 451 aa3.7□□□□□ -1.82
UPF3YGR072W FSH1P38777 243 aaKnown RBP3.7□□□□□ -1.82
UPF3YGR072W LRO1P40345 661 aa3.7□□□□□ -1.82
UPF3YGR072W TMA108P40462 946 aa3.7□□□□□ -1.82
UPF3YGR072W THI6P41835 540 aa3.7□□□□□ -1.82
UPF3YGR072W IDS2P46958 469 aa3.7□□□□□ -1.82
UPF3YGR072W YGR054WP53235 642 aaKnown RBP3.7□□□□□ -1.82
UPF3YGR072W ARC35P53731 342 aaKnown RBP3.7□□□□□ -1.82
UPF3YGR072W YPL108WQ02872 168 aaPredicted RBP3.7□□□□□ -1.82
UPF3YGR072W TRS31Q03337 283 aa3.7□□□□□ -1.82
UPF3YGR072W ENT2Q05785 613 aa3.7□□□□□ -1.82
UPF3YGR072W RIT1P23796 513 aa3.69□□□□□ -1.82
UPF3YGR072W PRP45P28004 379 aaPredicted RBP3.69□□□□□ -1.82
UPF3YGR072W CAP1P28495 268 aaKnown RBP3.69□□□□□ -1.82
UPF3YGR072W GCD7P32502 381 aaPredicted RBP3.69□□□□□ -1.82
UPF3YGR072W DSS4P32601 143 aa3.69□□□□□ -1.82
UPF3YGR072W MNT3P40549 630 aa3.69□□□□□ -1.82
UPF3YGR072W POL31P46957 487 aa3.69□□□□□ -1.82
UPF3YGR072W IMA1P53051 589 aa3.69□□□□□ -1.82
UPF3YGR072W ARR3Q06598 404 aa3.69□□□□□ -1.82
UPF3YGR072W CSR1Q06705 408 aaKnown RBP3.69□□□□□ -1.82
UPF3YGR072W ZPS1Q12512 249 aa3.69□□□□□ -1.82
UPF3YGR072W RPL7AP05737 244 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W ADE3P07245 946 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W BIK1P11709 440 aa3.68□□□□□ -1.82
UPF3YGR072W NCP1P16603 691 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W BET2P20133 325 aa3.68□□□□□ -1.82
UPF3YGR072W FRD1P32614 470 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W NUP120P35729 1037 aa3.68□□□□□ -1.82
UPF3YGR072W TEF4P36008 412 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W NOC2P39744 710 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W SKP2P42843 763 aa3.68□□□□□ -1.82
UPF3YGR072W NMD5P46970 1048 aa3.68□□□□□ -1.82
UPF3YGR072W ERG13P54839 491 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W TIM50Q02776 476 aa3.68□□□□□ -1.82
UPF3YGR072W RPL7BQ12213 244 aaKnown RBP3.68□□□□□ -1.82
UPF3YGR072W RRI2Q12348 645 aa3.68□□□□□ -1.82
UPF3YGR072W HEM1P09950 548 aaPredicted RBP3.67□□□□□ -1.82
UPF3YGR072W HSC82P15108 705 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W NOP1P15646 327 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W RPS7AP26786 190 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W ARP2P32381 391 aaKnown RBP3.67□□□□□ -1.82
UPF3YGR072W CNS1P33313 385 aa3.67□□□□□ -1.82
UPF3YGR072W PIH1P38768 344 aa3.67□□□□□ -1.82
UPF3YGR072W BST1P43571 1029 aa3.67□□□□□ -1.82
UPF3YGR072W CTF18P49956 741 aa3.67□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms