RNA–Protein interactions for RNA: YDL216C

RRI1, Transcript of Catalytic subunit of the COP9 signalosome (CSN) complex, yeast

Gene RRI1, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRI1	YDL216C	MTG2	P38860	518 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	ARB1	P40024	610 aa	Known RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	CAB2	P40506	365 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	YJR008W	P47085	338 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	YNL058C	P53947	316 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	ARA2	Q04212	335 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	ORM2	Q06144	216 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	IWR1	Q07532	353 aa	Predicted RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	SEC3	P33332	1336 aa	Known RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	PGK1	P00560	416 aa	Known RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	POL3	P15436	1097 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	PHO81	P17442	1178 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	YJU2	P28320	278 aa	Predicted RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	SWC3	P31376	625 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	ESF2	P53743	316 aa	Known RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	YPL108W	Q02872	168 aa	Predicted RBP	4.97	□□□□□ -1.61
RRI1	YDL216C	RAD33	Q04231	177 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	HIM1	Q06674	414 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	LCB4	Q12246	624 aa		4.97	□□□□□ -1.61
RRI1	YDL216C	PDE1	P22434	369 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	AMD2	P22580	549 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	MCM3	P24279	971 aa	Known RBP	4.96	□□□□□ -1.62
RRI1	YDL216C	CPR6	P53691	371 aa	Known RBP	4.96	□□□□□ -1.62
RRI1	YDL216C	UBX4	P54730	416 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	MOT3	P54785	490 aa	Known RBP	4.96	□□□□□ -1.62
RRI1	YDL216C	AAT1	Q01802	451 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	UBP16	Q02863	499 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	ATG21	Q02887	496 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	RIM13	Q03792	727 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	SPN1	Q06505	410 aa	Predicted RBP	4.96	□□□□□ -1.62
RRI1	YDL216C	YDL242W	Q07746	117 aa		4.96	□□□□□ -1.62
RRI1	YDL216C	RDL1	Q12305	139 aa	Known RBP	4.96	□□□□□ -1.62
RRI1	YDL216C	BI2	P03873	423 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	ARO9	P38840	513 aa	Predicted RBP	4.95	□□□□□ -1.62
RRI1	YDL216C	TPM2	P40414	161 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	FAF1	P40546	346 aa	Predicted RBP	4.95	□□□□□ -1.62
RRI1	YDL216C	CIR1	P42940	261 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	ATP23	P53722	227 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	YML119W	Q03208	357 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	YBR255C-A	Q3E776	120 aa		4.95	□□□□□ -1.62
RRI1	YDL216C	NUP1	P20676	1076 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	APN1	P22936	367 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	RIT1	P23796	513 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	IMA1	P53051	589 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	PLM2	Q04383	521 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	HRD3	Q05787	833 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	BSP1	Q06604	576 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	CYK3	Q07533	885 aa		4.94	□□□□□ -1.62
RRI1	YDL216C	BIK1	P11709	440 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	MBR1	P23493	339 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	RPF2	P36160	344 aa	Known RBP	4.93	□□□□□ -1.62
RRI1	YDL216C	VPS8	P39702	1274 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	SPC72	P39723	622 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	LTP1	P40347	161 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	SAE2	P46946	345 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	YPL191C	Q08930	360 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	ICL2	Q12031	575 aa		4.93	□□□□□ -1.62
RRI1	YDL216C	ADE3	P07245	946 aa	Known RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	PGI1	P12709	554 aa	Known RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	SEC18	P18759	758 aa	Known RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	RRP43	P25359	394 aa	Predicted RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	SIP1	P32578	815 aa		4.92	□□□□□ -1.62
RRI1	YDL216C	FSH1	P38777	243 aa	Known RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	ACA1	P39970	489 aa		4.92	□□□□□ -1.62
RRI1	YDL216C	BPL1	P48445	690 aa	Predicted RBP	4.92	□□□□□ -1.62
RRI1	YDL216C	YML053C	Q04978	212 aa		4.92	□□□□□ -1.62
RRI1	YDL216C	AFT2	Q08957	416 aa		4.92	□□□□□ -1.62
RRI1	YDL216C	KES1	P35844	434 aa	Known RBP	4.91	□□□□□ -1.62
RRI1	YDL216C	SAP1	P39955	897 aa	Known RBP	4.91	□□□□□ -1.62
RRI1	YDL216C	SKP2	P42843	763 aa		4.91	□□□□□ -1.62
RRI1	YDL216C	BST1	P43571	1029 aa		4.91	□□□□□ -1.62
RRI1	YDL216C	Q0010	Q9ZZX9	128 aa		4.91	□□□□□ -1.62
RRI1	YDL216C	PET122	P10355	254 aa		4.9	□□□□□ -1.63
RRI1	YDL216C	MSM1	P22438	575 aa		4.9	□□□□□ -1.63
RRI1	YDL216C	SWI4	P25302	1093 aa	Known RBP	4.9	□□□□□ -1.63
RRI1	YDL216C	GCD7	P32502	381 aa	Predicted RBP	4.9	□□□□□ -1.63
RRI1	YDL216C	BEM3	P32873	1128 aa		4.9	□□□□□ -1.63
RRI1	YDL216C	VBA2	P38358	474 aa	Known RBP	4.9	□□□□□ -1.63
RRI1	YDL216C	SNO3	P43544	222 aa		4.9	□□□□□ -1.63
RRI1	YDL216C	NMD5	P46970	1048 aa		4.9	□□□□□ -1.63
RRI1	YDL216C	PNO1	Q99216	274 aa	Known RBP	4.9	□□□□□ -1.63
RRI1	YDL216C	SES1	P07284	462 aa	Known RBP	4.89	□□□□□ -1.63
RRI1	YDL216C	ARP2	P32381	391 aa	Known RBP	4.89	□□□□□ -1.63
RRI1	YDL216C	PTH2	P34222	208 aa		4.89	□□□□□ -1.63
RRI1	YDL216C	PUG1	P40100	303 aa		4.89	□□□□□ -1.63
RRI1	YDL216C	ULP2	P40537	1034 aa	Predicted RBP	4.89	□□□□□ -1.63
RRI1	YDL216C	YPL071C	Q02864	156 aa		4.89	□□□□□ -1.63
RRI1	YDL216C	TPO3	Q06451	622 aa		4.89	□□□□□ -1.63
RRI1	YDL216C	YLR111W	Q12528	110 aa		4.89	□□□□□ -1.63
RRI1	YDL216C	URE2	P23202	354 aa	Known RBP	4.88	□□□□□ -1.63
RRI1	YDL216C	CLB4	P24871	460 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	MRPL36	P36531	177 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	ERC1	P38767	581 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	FUN12	P39730	1002 aa	Known RBP	4.88	□□□□□ -1.63
RRI1	YDL216C	XBP1	P40489	647 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	BNA3	P47039	444 aa	Known RBP	4.88	□□□□□ -1.63
RRI1	YDL216C	YAT1	P80235	687 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	TRS130	Q03660	1102 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	GTB1	Q04924	702 aa		4.88	□□□□□ -1.63
RRI1	YDL216C	SUL2	Q12325	893 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms