RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 POLR3CQ9BUI4 534 aaPredicted RBP16.63■□□□□ 0.25
COL5A1-208ENST00000618395 GPRASP1Q5JY77 1395 aa16.63■□□□□ 0.25
COL5A1-208ENST00000618395 IMPG2Q9BZV3 1241 aa16.63■□□□□ 0.25
COL5A1-208ENST00000618395 SART1O43290 800 aaKnown RBP16.63■□□□□ 0.25
COL5A1-208ENST00000618395 UTP6Q9NYH9 597 aaKnown RBP16.63■□□□□ 0.25
COL5A1-208ENST00000618395 ZBBXA8MT70 800 aa16.63■□□□□ 0.25
COL5A1-208ENST00000618395 GGNBP2Q9H3C7 697 aa16.63■□□□□ 0.25
COL5A1-208ENST00000618395 COPG1Q9Y678 874 aaKnown RBP16.63■□□□□ 0.25
COL5A1-208ENST00000618395 PDHA1P08559 390 aa16.63■□□□□ 0.25
COL5A1-208ENST00000618395 GEMIN8Q9NWZ8 242 aaKnown RBP16.63■□□□□ 0.25
COL5A1-208ENST00000618395 PMS1P54277 932 aaKnown RBP16.62■□□□□ 0.25
COL5A1-208ENST00000618395 WBP4O75554 376 aaKnown RBP16.62■□□□□ 0.25
COL5A1-208ENST00000618395 ATF3P18847 181 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 C6orf118Q5T5N4 469 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 LRRC8CQ8TDW0 803 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 SPC25Q9HBM1 224 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 CCDC169A6NNP5 214 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 RANBP6O60518 1105 aaKnown RBP16.62■□□□□ 0.25
COL5A1-208ENST00000618395 CHGBP05060 677 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 C8orf34Q49A92 452 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 ALG1Q9BT22 464 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 FANCCQ00597 558 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 TMTC3Q6ZXV5 915 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 KLHL7Q8IXQ5 586 aa16.62■□□□□ 0.25
COL5A1-208ENST00000618395 DKC1O60832 514 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL5A1-208ENST00000618395 TRAF1Q13077 416 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 SH3GL2Q99962 352 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 PLEKHA4Q9H4M7 779 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 CUL4BQ13620 913 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 NECAB1Q8N987 351 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 NCOA7Q8NI08 942 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 ANKRD36BQ8N2N9 1353 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 PSPC1Q8WXF1 523 aaKnown RBP16.61■□□□□ 0.25
COL5A1-208ENST00000618395 KIFAP3Q92845 792 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 DHX58Q96C10 678 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 DYDC2Q96IM9 177 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 INTS9Q9NV88 658 aaKnown RBP16.61■□□□□ 0.25
COL5A1-208ENST00000618395 STX17P56962 302 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 CBX8Q9HC52 389 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 CNGB3Q9NQW8 809 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 PPP1R2P41236 205 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 MMEL1Q495T6 779 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 PLEKHO1Q53GL0 409 aaPredicted RBP16.61■□□□□ 0.25
COL5A1-208ENST00000618395 BATF3Q9NR55 127 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 BRAPQ7Z569 592 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 CCDC105Q8IYK2 499 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 ZNF513Q8N8E2 541 aaPredicted RBP16.61■□□□□ 0.25
COL5A1-208ENST00000618395 KIFC3Q9BVG8 833 aa16.61■□□□□ 0.25
COL5A1-208ENST00000618395 A0A1B0GW55 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L2P0CJ85 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L3P0CJ86 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L4P0CJ87 422 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L5P0CJ88 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L6P0CJ89 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4L7P0CJ90 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 HIBCHQ6NVY1 386 aaPredicted RBP16.6■□□□□ 0.25
COL5A1-208ENST00000618395 TMCO5AQ8N6Q1 288 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DDX28Q9NUL7 540 aaKnown RBP16.6■□□□□ 0.25
COL5A1-208ENST00000618395 DUX4Q9UBX2 424 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 MROH2BQ7Z745 1585 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 CACYBPQ9HB71 228 aaKnown RBP16.6■□□□□ 0.25
COL5A1-208ENST00000618395 LMNB1P20700 586 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 IL9RQ01113 521 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 SYNRGQ9UMZ2 1314 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 RPS6KA1Q15418 735 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 CNOT10Q9H9A5 744 aaKnown RBP16.6■□□□□ 0.25
COL5A1-208ENST00000618395 NMIQ13287 307 aaPredicted RBP16.6■□□□□ 0.25
COL5A1-208ENST00000618395 SLC9C1Q4G0N8 1177 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 NLRP2Q9NX02 1062 aa16.6■□□□□ 0.25
COL5A1-208ENST00000618395 MIS18AQ9NYP9 233 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 STK10O94804 968 aaKnown RBP16.59■□□□□ 0.25
COL5A1-208ENST00000618395 HARSP12081 509 aaKnown RBP16.59■□□□□ 0.25
COL5A1-208ENST00000618395 RASA3Q14644 834 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 ZBTB41Q5SVQ8 909 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 NXNQ6DKJ4 435 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 PSMB7Q99436 277 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 MAD1L1Q9Y6D9 718 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 PSMC1P62191 440 aaKnown RBP16.59■□□□□ 0.25
COL5A1-208ENST00000618395 CECR2Q9BXF3 1484 aa16.59■□□□□ 0.25
COL5A1-208ENST00000618395 IFIT1P09914 478 aaKnown RBP16.58■□□□□ 0.25
COL5A1-208ENST00000618395 SLC4A7Q9Y6M7 1214 aa16.58■□□□□ 0.25
COL5A1-208ENST00000618395 MAP3K12Q12852 859 aa16.58■□□□□ 0.25
COL5A1-208ENST00000618395 SLC44A4Q53GD3 710 aa16.58■□□□□ 0.25
COL5A1-208ENST00000618395 KCTD16Q68DU8 428 aa16.58■□□□□ 0.25
COL5A1-208ENST00000618395 TYW1Q9NV66 732 aaKnown RBP16.58■□□□□ 0.25
COL5A1-208ENST00000618395 TBC1D8BQ0IIM8 1120 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 ARHGAP44Q17R89 818 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 LRRC8AQ8IWT6 810 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 KIFC2Q96AC6 838 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 NOC4LQ9BVI4 516 aaKnown RBP16.58■□□□□ 0.24
COL5A1-208ENST00000618395 FYCO1Q9BQS8 1478 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 FAM13AO94988 1023 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 CTNND2Q9UQB3 1225 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 KRT12Q99456 494 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 PEX26Q7Z412 305 aa16.58■□□□□ 0.24
COL5A1-208ENST00000618395 APOBRQ0VD83 1088 aa16.57■□□□□ 0.24
COL5A1-208ENST00000618395 SSH1Q8WYL5 1049 aa16.57■□□□□ 0.24
COL5A1-208ENST00000618395 AMOTL2Q9Y2J4 779 aa16.57■□□□□ 0.24
COL5A1-208ENST00000618395 APOA1P02647 267 aa16.57■□□□□ 0.24
COL5A1-208ENST00000618395 IFIH1Q9BYX4 1025 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms