RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TTLL8A6PVC2 850 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 FAM177BA6PVY3 158 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 ICMTO60725 284 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 EIF4A1P60842 406 aaKnown RBP12.08□□□□□ -0.48
CIITA-208ENST00000572665 C16orf46Q6P387 395 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 NGEFQ8N5V2 710 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 JMYQ8N9B5 988 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 HELQQ8TDG4 1101 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 RPGRQ92834 1020 aaKnown RBP12.08□□□□□ -0.48
CIITA-208ENST00000572665 SAP130Q9H0E3 1048 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 ANO2Q9NQ90 1003 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 TSPYL4Q9UJ04 414 aa12.08□□□□□ -0.48
CIITA-208ENST00000572665 RRP7AQ9Y3A4 280 aaKnown RBP12.08□□□□□ -0.48
CIITA-208ENST00000572665 MYL6BP14649 208 aa12.07□□□□□ -0.48
CIITA-208ENST00000572665 PLA2G4AP47712 749 aa12.07□□□□□ -0.48
CIITA-208ENST00000572665 HLFQ16534 295 aa12.07□□□□□ -0.48
CIITA-208ENST00000572665 PPP1R42Q7Z4L9 355 aa12.07□□□□□ -0.48
CIITA-208ENST00000572665 MYO19Q96H55 970 aa12.07□□□□□ -0.48
CIITA-208ENST00000572665 RIC1Q4ADV7 1423 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 H3BRB1 525 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 RIPK4P57078 832 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 MTMR3Q13615 1198 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 PARP10Q53GL7 1025 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 LYSMD3Q7Z3D4 306 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 ALDH16A1Q8IZ83 802 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 C7orf43Q8WVR3 580 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 JDP2Q8WYK2 163 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 ZFP42Q96MM3 310 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 TUT1Q9H6E5 874 aaKnown RBP12.06□□□□□ -0.48
CIITA-208ENST00000572665 HCN4Q9Y3Q4 1203 aa12.06□□□□□ -0.48
CIITA-208ENST00000572665 ST8SIA5O15466 376 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 DDNO94850 711 aaPredicted RBP12.05□□□□□ -0.48
CIITA-208ENST00000572665 MFAP1P55081 439 aaKnown RBP12.05□□□□□ -0.48
CIITA-208ENST00000572665 POU4F2Q12837 409 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 CRY2Q49AN0 593 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 HSP90AB3PQ58FF7 597 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 COX20Q5RI15 118 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 PRICKLE2Q7Z3G6 844 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 LDHDQ86WU2 507 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 RBM17Q96I25 401 aaKnown RBP12.05□□□□□ -0.48
CIITA-208ENST00000572665 PSMD1Q99460 953 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 AAASQ9NRG9 546 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 RNF123Q5XPI4 1314 aa12.05□□□□□ -0.48
CIITA-208ENST00000572665 POTECB2RU33 542 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 IARSP41252 1262 aaKnown RBP12.04□□□□□ -0.48
CIITA-208ENST00000572665 PHKA2P46019 1235 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 HTRA3P83110 453 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 CCDC27Q2M243 656 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 PNMA8AQ86V59 439 aaPredicted RBP12.04□□□□□ -0.48
CIITA-208ENST00000572665 GLYCTKQ8IVS8 523 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 PHACTR1Q9C0D0 580 aa12.04□□□□□ -0.48
CIITA-208ENST00000572665 MYBBP1AQ9BQG0 1328 aaKnown RBP12.04□□□□□ -0.48
CIITA-208ENST00000572665 HOXA10P31260 410 aaPredicted RBP12.03□□□□□ -0.48
CIITA-208ENST00000572665 TXLNAP40222 546 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 TMPOP42166 694 aaKnown RBP12.03□□□□□ -0.48
CIITA-208ENST00000572665 EIF6P56537 245 aaKnown RBP12.03□□□□□ -0.48
CIITA-208ENST00000572665 WDR43Q15061 677 aaKnown RBP eCLIP12.03□□□□□ -0.48
CIITA-208ENST00000572665 WDR44Q5JSH3 913 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 SYNE4Q8N205 404 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 CRAMP1Q96RY5 1269 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 THUMPD2Q9BTF0 503 aaKnown RBP12.03□□□□□ -0.48
CIITA-208ENST00000572665 ATP13A2Q9NQ11 1180 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 ZNF277Q9NRM2 450 aaPredicted RBP12.03□□□□□ -0.48
CIITA-208ENST00000572665 HACL1Q9UJ83 578 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 LRFN2Q9ULH4 789 aa12.03□□□□□ -0.48
CIITA-208ENST00000572665 FIGNL2A6NMB9 653 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 TNFRSF10BO14763 440 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 EIF2S2P20042 333 aaKnown RBP12.02□□□□□ -0.49
CIITA-208ENST00000572665 GPTP24298 496 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 ECM1Q16610 540 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 RTN1Q16799 776 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 C1orf53Q5VUE5 145 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 TTLL7Q6ZT98 887 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 ZNF34Q8IZ26 560 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 GPC2Q8N158 579 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 VPS33BQ9H267 617 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 TAF1DQ9H5J8 278 aaPredicted RBP12.02□□□□□ -0.49
CIITA-208ENST00000572665 ANKRD36CQ5JPF3 1778 aa12.02□□□□□ -0.49
CIITA-208ENST00000572665 FZD9O00144 591 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 NPR3P17342 541 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 SUSD4Q5VX71 490 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 SUPT20HQ8NEM7 779 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 UTP14AQ9BVJ6 771 aaKnown RBP12.01□□□□□ -0.49
CIITA-208ENST00000572665 ZDHHC3Q9NYG2 299 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 BIN2Q9UBW5 565 aaPredicted RBP12.01□□□□□ -0.49
CIITA-208ENST00000572665 ABCC12Q96J65 1359 aa12.01□□□□□ -0.49
CIITA-208ENST00000572665 NTSR2O95665 410 aa12□□□□□ -0.49
CIITA-208ENST00000572665 RHOQP17081 205 aa12□□□□□ -0.49
CIITA-208ENST00000572665 EPHX2P34913 555 aa12□□□□□ -0.49
CIITA-208ENST00000572665 EAPPQ56P03 285 aaPredicted RBP12□□□□□ -0.49
CIITA-208ENST00000572665 RUNDC1Q96C34 613 aa12□□□□□ -0.49
CIITA-208ENST00000572665 IRX2Q9BZI1 471 aaPredicted RBP12□□□□□ -0.49
CIITA-208ENST00000572665 DACH1Q9UI36 760 aa12□□□□□ -0.49
CIITA-208ENST00000572665 DNMT3LQ9UJW3 386 aa12□□□□□ -0.49
CIITA-208ENST00000572665 UBN2Q6ZU65 1347 aa12□□□□□ -0.49
CIITA-208ENST00000572665 HOXB7P09629 217 aa11.99□□□□□ -0.49
CIITA-208ENST00000572665 SLC10A5Q5PT55 438 aa11.99□□□□□ -0.49
CIITA-208ENST00000572665 NIM1KQ8IY84 436 aa11.99□□□□□ -0.49
CIITA-208ENST00000572665 AIDAQ96BJ3 306 aa11.99□□□□□ -0.49
CIITA-208ENST00000572665 STIM2Q9P246 746 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms