RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 GABPAQ06546 454 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 RNF20Q5VTR2 975 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 KRT26Q7Z3Y9 468 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 LDHDQ86WU2 507 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 SULF1Q8IWU6 871 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 STK11IPQ8N1F8 1099 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 SLC44A5Q8NCS7 719 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 CSRNP1Q96S65 589 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 EHD4Q9H223 541 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 DNAJC18Q9H819 358 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 GPBP1L1Q9HC44 474 aaPredicted RBP19.71■□□□□ 0.75
VPS4A-202ENST00000562754 CLEC11AQ9Y240 323 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.71■□□□□ 0.75
VPS4A-202ENST00000562754 PPP2R3BQ9Y5P8 575 aa19.71■□□□□ 0.75
VPS4A-202ENST00000562754 FAM196BA6NMK8 535 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 TSGA10IPQ3SY00 556 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 PRAMEF18Q5VWM3 479 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 STAG1Q8WVM7 1258 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 GLIS2Q9BZE0 524 aaPredicted RBP19.7■□□□□ 0.74
VPS4A-202ENST00000562754 INCENPQ9NQS7 918 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 PI4KBQ9UBF8 816 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 NEDD4P46934 1319 aa19.7■□□□□ 0.74
VPS4A-202ENST00000562754 E7EWF7 191 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 COL9A3Q14050 684 aaPredicted RBP19.69■□□□□ 0.74
VPS4A-202ENST00000562754 AKNAD1Q5T1N1 836 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 NBPF12Q5TAG4 269 aaPredicted RBP19.69■□□□□ 0.74
VPS4A-202ENST00000562754 MAP1SQ66K74 1059 aaPredicted RBP19.69■□□□□ 0.74
VPS4A-202ENST00000562754 C16orf86Q6ZW13 317 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 USP48Q86UV5 1035 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 METTL16Q86W50 562 aaKnown RBP19.69■□□□□ 0.74
VPS4A-202ENST00000562754 NKX2-3Q8TAU0 364 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 IL17RAQ96F46 866 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 SERPINB13Q9UIV8 391 aa19.69■□□□□ 0.74
VPS4A-202ENST00000562754 KIF3CO14782 793 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 FGRP09769 529 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 ZKSCAN1P17029 563 aaPredicted RBP19.68■□□□□ 0.74
VPS4A-202ENST00000562754 YY1P25490 414 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 ANAPC15P60006 121 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 ADCK5Q3MIX3 580 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 KIF2CQ99661 725 aa19.68■□□□□ 0.74
VPS4A-202ENST00000562754 PAPPA2Q9BXP8 1791 aa19.67■□□□□ 0.74
VPS4A-202ENST00000562754 PRDM1O75626 825 aa19.67■□□□□ 0.74
VPS4A-202ENST00000562754 SHMT1P34896 483 aa19.67■□□□□ 0.74
VPS4A-202ENST00000562754 CDK8P49336 464 aa19.67■□□□□ 0.74
VPS4A-202ENST00000562754 CDCA5Q96FF9 252 aa19.67■□□□□ 0.74
VPS4A-202ENST00000562754 ORC4O43929 436 aa19.66■□□□□ 0.74
VPS4A-202ENST00000562754 SLC3A2P08195 630 aaKnown RBP19.66■□□□□ 0.74
VPS4A-202ENST00000562754 MFSD6Q6ZSS7 791 aa19.66■□□□□ 0.74
VPS4A-202ENST00000562754 CDC37L1Q7L3B6 337 aa19.66■□□□□ 0.74
VPS4A-202ENST00000562754 FOXP4Q8IVH2 680 aaPredicted RBP19.66■□□□□ 0.74
VPS4A-202ENST00000562754 CRACR2BQ8N4Y2 399 aaPredicted RBP19.66■□□□□ 0.74
VPS4A-202ENST00000562754 RNF41Q9H4P4 317 aaPredicted RBP19.66■□□□□ 0.74
VPS4A-202ENST00000562754 GREB1LQ9C091 1923 aaPredicted RBP19.66■□□□□ 0.74
VPS4A-202ENST00000562754 RASA1P20936 1047 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 MAP3K10Q02779 954 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 PDE4BQ07343 736 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 KRT32Q14532 448 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 MIGA2Q7L4E1 593 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 JAKMIP1Q96N16 626 aaKnown RBP19.65■□□□□ 0.74
VPS4A-202ENST00000562754 SWAP70Q9UH65 585 aa19.65■□□□□ 0.74
VPS4A-202ENST00000562754 HERC5Q9UII4 1024 aaKnown RBP19.65■□□□□ 0.74
VPS4A-202ENST00000562754 OTOFQ9HC10 1997 aa19.64■□□□□ 0.74
VPS4A-202ENST00000562754 B4E1Z4 1266 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 TRAF5O00463 557 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 TBC1D12O60347 775 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 PCP11498 1178 aaKnown RBP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 FMR1Q06787 632 aaKnown RBP eCLIP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 RRP12Q5JTH9 1297 aaKnown RBP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 CHADLQ6NUI6 762 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 MB21D2Q8IYB1 491 aaPredicted RBP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 ZNF784Q8NCA9 323 aaPredicted RBP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.64■□□□□ 0.73
VPS4A-202ENST00000562754 TAOK2Q9UL54 1235 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 ATAD5Q96QE3 1844 aa19.64■□□□□ 0.73
VPS4A-202ENST00000562754 CPA1P15085 419 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 RRP1BQ14684 758 aaKnown RBP19.63■□□□□ 0.73
VPS4A-202ENST00000562754 TATDN1Q6P1N9 297 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 NCOA7Q8NI08 942 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 TRIM34Q9BYJ4 488 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 CNNM2Q9H8M5 875 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 TOMM22Q9NS69 142 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 FZD1Q9UP38 647 aa19.63■□□□□ 0.73
VPS4A-202ENST00000562754 KDM4AO75164 1064 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 ANTXR2P58335 489 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 SHROOM1Q2M3G4 852 aaPredicted RBP19.62■□□□□ 0.73
VPS4A-202ENST00000562754 SUPT20HL1Q3ZLR7 823 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 CYB5R4Q7L1T6 521 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 RALYLQ86SE5 291 aaKnown RBP19.62■□□□□ 0.73
VPS4A-202ENST00000562754 NEK1Q96PY6 1258 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 TM6SF1Q9BZW5 370 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 KRT23Q9C075 422 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 MKNK2Q9HBH9 465 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 DOCK1Q14185 1865 aa19.62■□□□□ 0.73
VPS4A-202ENST00000562754 TRPM7Q96QT4 1865 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 AKR1B1P15121 316 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 CASTP20810 708 aaKnown RBP19.61■□□□□ 0.73
VPS4A-202ENST00000562754 TRDNQ13061 729 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 FAM47AQ5JRC9 791 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 DCAF15Q66K64 600 aa19.61■□□□□ 0.73
VPS4A-202ENST00000562754 HOOK2Q96ED9 719 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms