RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 GOLGA8AA7E2F4 631 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 LETM1O95202 739 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 LDHBP07195 334 aaKnown RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 NASPP49321 788 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 SYNE3Q6ZMZ3 975 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 ESR2Q92731 530 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 ATP8A2Q9NTI2 1148 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 GUCY1B3Q02153 619 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 WTAPQ15007 396 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 ATL3Q6DD88 541 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 CTR9Q6PD62 1173 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 TMTC2Q8N394 836 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 GPR101Q96P66 508 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 UBAC1Q9BSL1 405 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 MYH2Q9UKX2 1941 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 RXRAP19793 462 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 ADD1P35611 737 aaKnown RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 GSTO1P78417 241 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 FBXO18Q8NFZ0 1043 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 RBSNQ9H1K0 784 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 CD209Q9NNX6 404 aa11.23□□□□□ -0.61
CLIP1-212ENST00000540304 DCP1AQ9NPI6 582 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-212ENST00000540304 DLEC1Q9Y238 1755 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 GOLGA6L4A6NEF3 574 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 SMIM22K7EJ46 135 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 PPEF1O14829 653 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-212ENST00000540304 IL1R1P14778 569 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 CDC27P30260 824 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 RCAN1P53805 252 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 TBC1D16Q8TBP0 767 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 ZNF396Q96N95 335 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-212ENST00000540304 ZKSCAN3Q9BRR0 538 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 ARPP21Q9UBL0 812 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-212ENST00000540304 USP17L12C9JPN9 530 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 USP17L21D6R901 530 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 FGRP09769 529 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 SP8Q8IXZ3 490 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 CCDC144CPQ8IYA2 1237 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 MYL10Q9BUA6 226 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 TSPY26PQ9H489 355 aa11.22□□□□□ -0.61
CLIP1-212ENST00000540304 FAM217BQ9NTX9 383 aaPredicted RBP11.22□□□□□ -0.61
CLIP1-212ENST00000540304 STK36Q9NRP7 1315 aa11.21□□□□□ -0.61
CLIP1-212ENST00000540304 CYP2D7A0A087X1C5 515 aa11.21□□□□□ -0.61
CLIP1-212ENST00000540304 NTRK3Q16288 839 aa11.21□□□□□ -0.61
CLIP1-212ENST00000540304 SBK1Q52WX2 424 aa11.21□□□□□ -0.61
CLIP1-212ENST00000540304 CGNQ9P2M7 1197 aaKnown RBP11.21□□□□□ -0.61
CLIP1-212ENST00000540304 POLLQ9UGP5 575 aa11.21□□□□□ -0.61
CLIP1-212ENST00000540304 COL11A2P13942 1736 aaPredicted RBP11.21□□□□□ -0.61
CLIP1-212ENST00000540304 TNKSO95271 1327 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 NAV1Q8NEY1 1877 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 ESPNB1AK53 854 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 SLC3A2P08195 630 aaKnown RBP11.21□□□□□ -0.62
CLIP1-212ENST00000540304 IARSP41252 1262 aaKnown RBP11.21□□□□□ -0.62
CLIP1-212ENST00000540304 SEC23AQ15436 765 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 ILDR1Q86SU0 546 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-212ENST00000540304 ALG1Q9BT22 464 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 ATP6V0A2Q9Y487 856 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 PARP3Q9Y6F1 533 aa11.21□□□□□ -0.62
CLIP1-212ENST00000540304 LDHCP07864 332 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 SRGNP10124 158 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 NPR1P16066 1061 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 IRX5P78411 483 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 RTN1Q16799 776 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 OTUD7BQ6GQQ9 843 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 BRAPQ7Z569 592 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 ZNF654Q8IZM8 581 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 RNF214Q8ND24 703 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 ZSCAN10Q96SZ4 725 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 NOL10Q9BSC4 688 aaKnown RBP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 RCOR1Q9UKL0 485 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 CCDC196A0A1B0GTZ2 297 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 C6orf229H3BNL8 230 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 ORC4O43929 436 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 RANBP6O60518 1105 aaKnown RBP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 BAG3O95817 575 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 MMP10P09238 476 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 PDE6BP35913 854 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 EP400NLQ6ZTU2 488 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 IQCA1Q86XH1 822 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 PHKBQ93100 1093 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 PGBD1Q96JS3 809 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 USP28Q96RU2 1077 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 FTOQ9C0B1 505 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 GJB4Q9NTQ9 266 aa11.2□□□□□ -0.62
CLIP1-212ENST00000540304 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-212ENST00000540304 MROH7-TTC4A0A0A0MT08 1334 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 FMNL1O95466 1100 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-212ENST00000540304 IFNAR1P17181 557 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 LIG1P18858 919 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 PPP4CP60510 307 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 CEBPZQ03701 1054 aaKnown RBP11.19□□□□□ -0.62
CLIP1-212ENST00000540304 SSRP1Q08945 709 aaKnown RBP11.19□□□□□ -0.62
CLIP1-212ENST00000540304 GRIK5Q16478 980 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 BICD2Q8TD16 824 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 CDK5RAP2Q96SN8 1893 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 PRDM1O75626 825 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 CLSTN1O94985 981 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 ALDH1B1P30837 517 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 USP5P45974 858 aa11.19□□□□□ -0.62
CLIP1-212ENST00000540304 KIF23Q02241 960 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms