RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RFX5P48382 616 aaPredicted RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 CERKLQ49MI3 558 aaPredicted RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 PTF1AQ7RTS3 328 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 FCHSD1Q86WN1 690 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 CCAR2Q8N163 923 aaKnown RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 UTYO14607 1347 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 PLEKHG2Q9H7P9 1386 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 GYS1P13807 737 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 KRT40Q6A162 431 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 CPXCR1Q8N123 301 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 ZNF274Q96GC6 653 aaPredicted RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 CSRNP1Q96S65 589 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 KCNJ14Q9UNX9 436 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 CD2BP2O95400 341 aaKnown RBP10.4□□□□□ -0.74
LIG4-202ENST00000405925 MRPL12P52815 198 aaKnown RBP10.4□□□□□ -0.74
LIG4-202ENST00000405925 PPP2R5BQ15173 497 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 AOC3Q16853 763 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 LETM2Q2VYF4 491 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 CFAP100Q494V2 611 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 CIAPIN1Q6FI81 312 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 HOOK2Q96ED9 719 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 A0A0G2JLW4 131 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 SMTNL1A8MU46 457 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 AFMP43652 599 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 CACNB3P54284 484 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 CDC37L1Q7L3B6 337 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 PODNQ7Z5L7 613 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 FANCBQ8NB91 859 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 ZNF277Q9NRM2 450 aaPredicted RBP10.4□□□□□ -0.74
LIG4-202ENST00000405925 VPS54Q9P1Q0 977 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 SERPINB13Q9UIV8 391 aa10.4□□□□□ -0.74
LIG4-202ENST00000405925 NECTIN1Q15223 517 aa10.4□□□□□ -0.75
LIG4-202ENST00000405925 COL23A1Q86Y22 540 aaPredicted RBP10.4□□□□□ -0.75
LIG4-202ENST00000405925 MED23Q9ULK4 1368 aa10.4□□□□□ -0.75
LIG4-202ENST00000405925 GOLGA8HP0CJ92 632 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 ICA1Q05084 483 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 ZNF174Q15697 407 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 JAKMIP3Q5VZ66 844 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 SP8Q8IXZ3 490 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 SMARCE1Q969G3 411 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 ZNF165P49910 485 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 NAP1L1P55209 391 aaKnown RBP10.39□□□□□ -0.75
LIG4-202ENST00000405925 CCDC173Q0VFZ6 552 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 PIK3AP1Q6ZUJ8 805 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 DYNLL2Q96FJ2 89 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 CRAMP1Q96RY5 1269 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 XRN1Q8IZH2 1706 aaKnown RBP10.39□□□□□ -0.75
LIG4-202ENST00000405925 SULF1Q8IWU6 871 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 TMOD4Q9NZQ9 345 aa10.39□□□□□ -0.75
LIG4-202ENST00000405925 PFKFB2O60825 505 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 PDIA3P30101 505 aaKnown RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 RILPL1Q5EBL4 403 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 PPFIBP1Q86W92 1011 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 TBC1D16Q8TBP0 767 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 DHX58Q96C10 678 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 PIK3C2AO00443 1686 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 ECE2O60344 883 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 CHGBP05060 677 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 PCP11498 1178 aaKnown RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 ARID4AP29374 1257 aaPredicted RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 STAT6P42226 847 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 AMPD3Q01432 767 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 USH1GQ495M9 461 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 APOA5Q6Q788 366 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 IBSPP21815 317 aaPredicted RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 ERMNQ8TAM6 284 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 BRPF3Q9ULD4 1205 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 FRMPD2Q68DX3 1309 aaPredicted RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 KLRF2D3W0D1 207 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 ABCB5Q2M3G0 1257 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 ZSCAN23Q3MJ62 389 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 DCAF15Q66K64 600 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 KANK3Q6NY19 840 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 SCLT1Q96NL6 688 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 PYM1Q9BRP8 204 aaKnown RBP10.38□□□□□ -0.75
LIG4-202ENST00000405925 USP25Q9UHP3 1055 aa10.38□□□□□ -0.75
LIG4-202ENST00000405925 MED1Q15648 1581 aaPredicted RBP10.37□□□□□ -0.75
LIG4-202ENST00000405925 VWA3AA6NCI4 1184 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 RGS12O14924 1447 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 CBFA2T2O43439 604 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 NFAT5O94916 1531 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 MATR3P43243 847 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIG4-202ENST00000405925 DTHD1Q6ZMT9 781 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 SH3RF3Q8TEJ3 882 aaPredicted RBP10.37□□□□□ -0.75
LIG4-202ENST00000405925 GPHNQ9NQX3 736 aaPredicted RBP10.37□□□□□ -0.75
LIG4-202ENST00000405925 ZSWIM5Q9P217 1185 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 ATP6V0A2Q9Y487 856 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 SCRN1Q12765 414 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 PKP1Q13835 747 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 STX1AQ16623 288 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 ANO1Q5XXA6 986 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 CCDC17Q96LX7 622 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 SPON1Q9HCB6 807 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 CSADQ9Y600 493 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 MON2Q7Z3U7 1717 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 A0A1B0GVL5 298 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 GDF11O95390 407 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 CYP2D6P10635 497 aa10.37□□□□□ -0.75
LIG4-202ENST00000405925 TOP1P11387 765 aaKnown RBP10.37□□□□□ -0.75
LIG4-202ENST00000405925 KRT79Q5XKE5 535 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms