RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 DDX4Q9NQI0 724 aaKnown RBP17.28■□□□□ 0.36
CBX3-201ENST00000337620 HDAC9Q9UKV0 1011 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 BRPF3Q9ULD4 1205 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.28■□□□□ 0.36
CBX3-201ENST00000337620 ARFGEF1Q9Y6D6 1849 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 ERICH2A1L162 156 aa17.27■□□□□ 0.36
CBX3-201ENST00000337620 PFKFB2O60825 505 aa17.27■□□□□ 0.36
CBX3-201ENST00000337620 CCT2P78371 535 aaKnown RBP17.27■□□□□ 0.36
CBX3-201ENST00000337620 NFXL1Q6ZNB6 911 aa17.27■□□□□ 0.36
CBX3-201ENST00000337620 UBAC1Q9BSL1 405 aa17.27■□□□□ 0.36
CBX3-201ENST00000337620 ORC4O43929 436 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 PRELPP51888 382 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 CACNB3P54284 484 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 EVCP57679 992 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 SCRN1Q12765 414 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 AGBL3Q8NEM8 1001 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 LY9Q9HBG7 655 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 MKNK2Q9HBH9 465 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 SENP2Q9HC62 589 aa17.27■□□□□ 0.35
CBX3-201ENST00000337620 NFIAQ12857 509 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 TNIP1Q15025 636 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 RAB11FIP4Q86YS3 637 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 PRMT6Q96LA8 375 aaPredicted RBP17.26■□□□□ 0.35
CBX3-201ENST00000337620 TDRD3Q9H7E2 651 aaKnown RBP17.26■□□□□ 0.35
CBX3-201ENST00000337620 GOLGA8BA8MQT2 603 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 GJB2P29033 226 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 NUCB2P80303 420 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 PKP1Q13835 747 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 WTAPQ15007 396 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 FAM47AQ5JRC9 791 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 NCOA5Q9HCD5 579 aaKnown RBP17.26■□□□□ 0.35
CBX3-201ENST00000337620 MYH1P12882 1939 aa17.26■□□□□ 0.35
CBX3-201ENST00000337620 CCDC69A6NI79 296 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 TSPY2A6NKD2 308 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 LIFRP42702 1097 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 DLGAP5Q15398 846 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 IQCA1Q86XH1 822 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 SLC44A5Q8NCS7 719 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 OSBPL5Q9H0X9 879 aaPredicted RBP17.25■□□□□ 0.35
CBX3-201ENST00000337620 FOCADQ5VW36 1801 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 ROBO3Q96MS0 1386 aa17.25■□□□□ 0.35
CBX3-201ENST00000337620 EIF6P56537 245 aaKnown RBP17.24■□□□□ 0.35
CBX3-201ENST00000337620 TCP10Q12799 353 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 RAB3GAP1Q15042 981 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 TTC6Q86TZ1 520 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 ZSCAN10Q96SZ4 725 aaPredicted RBP17.24■□□□□ 0.35
CBX3-201ENST00000337620 MTA3Q9BTC8 594 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 TNKSO95271 1327 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 SGMS1Q86VZ5 419 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 ZNF444Q8N0Y2 327 aaPredicted RBP17.24■□□□□ 0.35
CBX3-201ENST00000337620 ZNF287Q9HBT7 754 aa17.24■□□□□ 0.35
CBX3-201ENST00000337620 CDK8P49336 464 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 TFAP4Q01664 338 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 ZFPM1Q8IX07 1006 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 TMTC2Q8N394 836 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 HPS5Q9UPZ3 1129 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 SLC12A7Q9Y666 1083 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 GJA3Q9Y6H8 435 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 DDX60LQ5H9U9 1706 aaKnown RBP17.23■□□□□ 0.35
CBX3-201ENST00000337620 ECM29Q5VYK3 1845 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 SPDYE2BA6NHP3 402 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 FZD9O00144 591 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 JAK2O60674 1132 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 SPDYE6P0CI01 402 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 RXRAP19793 462 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 APOA5Q6Q788 366 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 SYNE3Q6ZMZ3 975 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 C16orf86Q6ZW13 317 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 IDI2Q9BXS1 227 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 FAM198AQ9UFP1 575 aa17.23■□□□□ 0.35
CBX3-201ENST00000337620 ZBTB43O43298 467 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 NMT2O60551 498 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 SEC23AQ15436 765 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 FOXD4L5Q5VV16 416 aaPredicted RBP17.22■□□□□ 0.35
CBX3-201ENST00000337620 MICU3Q86XE3 530 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 ENAHQ8N8S7 591 aaPredicted RBP17.22■□□□□ 0.35
CBX3-201ENST00000337620 FOXD4L4Q8WXT5 416 aaPredicted RBP17.22■□□□□ 0.35
CBX3-201ENST00000337620 TNPO1Q92973 898 aaKnown RBP17.22■□□□□ 0.35
CBX3-201ENST00000337620 CHMP4CQ96CF2 233 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 MYL10Q9BUA6 226 aa17.22■□□□□ 0.35
CBX3-201ENST00000337620 HLA-DOAP06340 250 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 TSPY3P0CV98 308 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 TSPY8P0CW00 308 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 METAP2P50579 478 aaKnown RBP eCLIP17.21■□□□□ 0.35
CBX3-201ENST00000337620 IFIT1BQ5T764 474 aaKnown RBP17.21■□□□□ 0.35
CBX3-201ENST00000337620 ZSCAN29Q8IWY8 852 aaPredicted RBP17.21■□□□□ 0.35
CBX3-201ENST00000337620 CCDC144CPQ8IYA2 1237 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 DDX11Q96FC9 970 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 LLPHQ9BRT6 129 aaKnown RBP17.21■□□□□ 0.35
CBX3-201ENST00000337620 TMOD2Q9NZR1 351 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 CLRN2A0PK11 232 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 DHX16O60231 1041 aaKnown RBP17.21■□□□□ 0.35
CBX3-201ENST00000337620 LMNB1P20700 586 aa17.21■□□□□ 0.35
CBX3-201ENST00000337620 SHTN1A0MZ66 631 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 CPLX1O14810 134 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 PPFIA3O75145 1194 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 CTDNEP1O95476 244 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 RASA1P20936 1047 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 SYT1P21579 422 aa17.2■□□□□ 0.34
CBX3-201ENST00000337620 NFKBIBQ15653 356 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms