RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KRTAP2-4Q9BYR9 128 aa0.96□□□□□ -2.26
SCN1A-219ENST00000641575 OBSCNQ5VST9 7968 aa0.96□□□□□ -2.26
SCN1A-219ENST00000641575 LCE4AQ5TA78 99 aa0.94□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP9-7A8MTY7 169 aa0.93□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP19-8Q3LI54 63 aa0.92□□□□□ -2.26
SCN1A-219ENST00000641575 NEBP20929 6669 aa0.92□□□□□ -2.26
SCN1A-219ENST00000641575 MT1BP07438 61 aa0.92□□□□□ -2.26
SCN1A-219ENST00000641575 MT1LQ93083 61 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 PRM1P04553 51 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 LCE1AQ5T7P2 110 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP19-3Q7Z4W3 81 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 LCE5AQ5TCM9 118 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP2-2Q9BYT5 123 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP2-1Q9BYU5 128 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 SYNE2Q8WXH0 6885 aaKnown RBP0.91□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP9-9Q9BYP9 154 aa0.91□□□□□ -2.26
SCN1A-219ENST00000641575 MT4P47944 62 aa0.9□□□□□ -2.26
SCN1A-219ENST00000641575 KRTAP19-1Q8IUB9 90 aa0.9□□□□□ -2.27
SCN1A-219ENST00000641575 MACF1Q9UPN3 7388 aaKnown RBP0.9□□□□□ -2.27
SCN1A-219ENST00000641575 USH2AO75445 5202 aa0.9□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP6-3Q3LI67 103 aa0.89□□□□□ -2.27
SCN1A-219ENST00000641575 HMCN1Q96RW7 5635 aa0.89□□□□□ -2.27
SCN1A-219ENST00000641575 MUC12Q9UKN1 5478 aa0.89□□□□□ -2.27
SCN1A-219ENST00000641575 LCE1DQ5T752 114 aa0.88□□□□□ -2.27
SCN1A-219ENST00000641575 LCE1BQ5T7P3 118 aa0.88□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP19-6Q3LI70 58 aa0.87□□□□□ -2.27
SCN1A-219ENST00000641575 MT1MQ8N339 61 aa0.87□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP4-12Q9BQ66 201 aa0.87□□□□□ -2.27
SCN1A-219ENST00000641575 MT1XP80297 61 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 LCE1CQ5T751 118 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 LCE1EQ5T753 118 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 LCE1FQ5T754 118 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 MT1EP04732 61 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP4-8Q9BYQ9 185 aa0.86□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP19-2Q3LHN2 52 aa0.85□□□□□ -2.27
SCN1A-219ENST00000641575 FSIP2Q5CZC0 6907 aa0.85□□□□□ -2.27
SCN1A-219ENST00000641575 KRTAP4-1Q9BYQ7 146 aa0.84□□□□□ -2.27
SCN1A-219ENST00000641575 GPR98Q8WXG9 6306 aa0.84□□□□□ -2.28
SCN1A-219ENST00000641575 MUC2Q02817 5179 aa0.83□□□□□ -2.28
SCN1A-219ENST00000641575 SYNE1Q8NF91 8797 aaKnown RBP0.83□□□□□ -2.28
SCN1A-219ENST00000641575 MT1AP04731 61 aa0.83□□□□□ -2.28
SCN1A-219ENST00000641575 MUC5ACP98088 5654 aa0.83□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.82□□□□□ -2.28
SCN1A-219ENST00000641575 MDN1Q9NU22 5596 aa0.82□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.82□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP9-8Q9BYQ0 159 aa0.8□□□□□ -2.28
SCN1A-219ENST00000641575 KMT2DO14686 5537 aa0.8□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP4-2Q9BYR5 136 aa0.78□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP4-8A0A0G2JLE6 195 aa0.78□□□□□ -2.28
SCN1A-219ENST00000641575 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP9-3Q9BYQ3 159 aa0.76□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP4-7Q9BYR0 210 aa0.75□□□□□ -2.29
SCN1A-219ENST00000641575 FCGBPQ9Y6R7 5405 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-219ENST00000641575 AHNAKQ09666 5890 aaKnown RBP0.74□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP5-9P26371 169 aa0.73□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP4-9Q9BYQ8 210 aa0.73□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP19-7Q3SYF9 63 aa0.73□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP9-4Q9BYQ2 154 aa0.73□□□□□ -2.29
SCN1A-219ENST00000641575 KRTAP5-5Q701N2 237 aaPredicted RBP0.7□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP5-3Q6L8H2 238 aa0.7□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP4-3Q9BYR4 195 aa0.69□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP9-6A8MVA2 160 aa0.68□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP4-11Q9BYQ6 195 aa0.67□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP6-1Q3LI64 71 aa0.66□□□□□ -2.3
SCN1A-219ENST00000641575 KRTAP5-4Q6L8H1 288 aa0.65□□□□□ -2.31
SCN1A-219ENST00000641575 MUC19Q7Z5P9 8384 aa0.64□□□□□ -2.31
SCN1A-219ENST00000641575 KRTAP20-2Q3LI61 65 aa0.63□□□□□ -2.31
SCN1A-219ENST00000641575 KRTAP5-8O75690 187 aa0.6□□□□□ -2.31
SCN1A-219ENST00000641575 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
SCN1A-219ENST00000641575 KRTAP5-7Q6L8G8 165 aa0.57□□□□□ -2.32
SCN1A-219ENST00000641575 KRTAP4-4Q9BYR3 166 aa0.55□□□□□ -2.32
SCN1A-219ENST00000641575 KRTAP5-1Q6L8H4 278 aa0.53□□□□□ -2.32
SCN1A-219ENST00000641575 KRTAP5-10Q6L8G5 202 aa0.52□□□□□ -2.33
SCN1A-219ENST00000641575 KRTAP21-1Q3LI58 79 aa0.5□□□□□ -2.33
SCN1A-219ENST00000641575 KRTAP5-11Q6L8G4 156 aa0.46□□□□□ -2.34
SCN1A-219ENST00000641575 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
SCN1A-219ENST00000641575 KRTAP21-2Q3LI59 83 aa0.4□□□□□ -2.35
Retrieved 77 of 20,778 RNA–protein pairs in 139.4 ms