RNA–Protein interactions for RNA: ENST00000639244.1

SCN3A-209, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5 BASIC

Gene SCN3A, Length 8,854 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-209ENST00000639244 LOC100996750A0A140TA64 210 aa1.25□□□□□ -2.21
SCN3A-209ENST00000639244 SYNE2Q8WXH0 6885 aaKnown RBP1.25□□□□□ -2.21
SCN3A-209ENST00000639244 KMT2CQ8NEZ4 4911 aaKnown RBP1.25□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-9Q9BYP9 154 aa1.25□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-6A8MVA2 160 aa1.24□□□□□ -2.21
SCN3A-209ENST00000639244 SPRR2DP22532 72 aa1.24□□□□□ -2.21
SCN3A-209ENST00000639244 MT1BP07438 61 aa1.23□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP4-3Q9BYR4 195 aa1.22□□□□□ -2.21
SCN3A-209ENST00000639244 KRTAP9-8Q9BYQ0 159 aa1.21□□□□□ -2.22
SCN3A-209ENST00000639244 ABCA13Q86UQ4 5058 aa1.21□□□□□ -2.22
SCN3A-209ENST00000639244 MT1AP04731 61 aa1.21□□□□□ -2.22
SCN3A-209ENST00000639244 FSIP2Q5CZC0 6907 aa1.21□□□□□ -2.22
SCN3A-209ENST00000639244 KIAA1109Q2LD37 5005 aa1.21□□□□□ -2.22
SCN3A-209ENST00000639244 RYR2Q92736 4967 aa1.2□□□□□ -2.22
SCN3A-209ENST00000639244 BIRC6Q9NR09 4857 aa1.2□□□□□ -2.22
SCN3A-209ENST00000639244 PCLOQ9Y6V0 5065 aa1.2□□□□□ -2.22
SCN3A-209ENST00000639244 KRTAP19-8Q3LI54 63 aa1.19□□□□□ -2.22
SCN3A-209ENST00000639244 MUC17Q685J3 4493 aa1.19□□□□□ -2.22
SCN3A-209ENST00000639244 KRTAP4-9Q9BYQ8 210 aa1.19□□□□□ -2.22
SCN3A-209ENST00000639244 MT4P47944 62 aa1.19□□□□□ -2.22
SCN3A-209ENST00000639244 MUC2Q02817 5179 aa1.16□□□□□ -2.22
SCN3A-209ENST00000639244 MT1LQ93083 61 aa1.15□□□□□ -2.22
SCN3A-209ENST00000639244 LCE1BQ5T7P3 118 aa1.15□□□□□ -2.23
SCN3A-209ENST00000639244 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.14□□□□□ -2.23
SCN3A-209ENST00000639244 KRTAP19-3Q7Z4W3 81 aa1.14□□□□□ -2.23
SCN3A-209ENST00000639244 KRTAP6-2Q3LI66 62 aa1.13□□□□□ -2.23
SCN3A-209ENST00000639244 MT1EP04732 61 aa1.13□□□□□ -2.23
SCN3A-209ENST00000639244 UBR4Q5T4S7 5183 aa1.12□□□□□ -2.23
SCN3A-209ENST00000639244 HERC2O95714 4834 aa1.12□□□□□ -2.23
SCN3A-209ENST00000639244 KRTAP5-5Q701N2 237 aaPredicted RBP1.11□□□□□ -2.23
SCN3A-209ENST00000639244 MUC12Q9UKN1 5478 aa1.11□□□□□ -2.23
SCN3A-209ENST00000639244 MT1MQ8N339 61 aa1.1□□□□□ -2.23
SCN3A-209ENST00000639244 KMT2DO14686 5537 aa1.1□□□□□ -2.23
SCN3A-209ENST00000639244 KRTAP19-2Q3LHN2 52 aa1.09□□□□□ -2.23
SCN3A-209ENST00000639244 HMCN2Q8NDA2 5059 aa1.08□□□□□ -2.24
SCN3A-209ENST00000639244 EPPK1P58107 5090 aaKnown RBP1.08□□□□□ -2.24
SCN3A-209ENST00000639244 OBSCNQ5VST9 7968 aa1.07□□□□□ -2.24
SCN3A-209ENST00000639244 MDN1Q9NU22 5596 aa1.07□□□□□ -2.24
SCN3A-209ENST00000639244 KRTAP19-7Q3SYF9 63 aa1.03□□□□□ -2.24
SCN3A-209ENST00000639244 KRTAP19-6Q3LI70 58 aa1.03□□□□□ -2.24
SCN3A-209ENST00000639244 KRTAP6-1Q3LI64 71 aa1.02□□□□□ -2.25
SCN3A-209ENST00000639244 DSTQ03001 7570 aaKnown RBP1.01□□□□□ -2.25
SCN3A-209ENST00000639244 RNF213Q63HN8 5207 aa1.01□□□□□ -2.25
SCN3A-209ENST00000639244 FAT4Q6V0I7 4981 aa1.01□□□□□ -2.25
SCN3A-209ENST00000639244 MUC19Q7Z5P9 8384 aa1□□□□□ -2.25
SCN3A-209ENST00000639244 KRTAP4-6Q9BYQ5 205 aa1□□□□□ -2.25
SCN3A-209ENST00000639244 FCGBPQ9Y6R7 5405 aaPredicted RBP0.99□□□□□ -2.25
SCN3A-209ENST00000639244 LCE1CQ5T751 118 aa0.99□□□□□ -2.25
SCN3A-209ENST00000639244 USH2AO75445 5202 aa0.95□□□□□ -2.26
SCN3A-209ENST00000639244 SSPOA2VEC9 5147 aa0.93□□□□□ -2.26
SCN3A-209ENST00000639244 KRTAP4-11Q9BYQ6 195 aa0.92□□□□□ -2.26
SCN3A-209ENST00000639244 KRTAP20-1Q3LI63 56 aa0.91□□□□□ -2.26
SCN3A-209ENST00000639244 KRTAP5-3Q6L8H2 238 aa0.91□□□□□ -2.26
SCN3A-209ENST00000639244 MUC5BQ9HC84 5762 aaPredicted RBP0.9□□□□□ -2.26
SCN3A-209ENST00000639244 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.9□□□□□ -2.27
SCN3A-209ENST00000639244 GPR98Q8WXG9 6306 aa0.89□□□□□ -2.27
SCN3A-209ENST00000639244 KRTAP4-4Q9BYR3 166 aa0.88□□□□□ -2.27
SCN3A-209ENST00000639244 KRTAP4-12Q9BQ66 201 aa0.87□□□□□ -2.27
SCN3A-209ENST00000639244 KRTAP5-9P26371 169 aa0.86□□□□□ -2.27
SCN3A-209ENST00000639244 KRTAP5-4Q6L8H1 288 aa0.86□□□□□ -2.27
SCN3A-209ENST00000639244 AHNAK2Q8IVF2 5795 aa0.86□□□□□ -2.27
SCN3A-209ENST00000639244 MACF1Q9UPN3 7388 aaKnown RBP0.84□□□□□ -2.27
SCN3A-209ENST00000639244 KRTAP4-2Q9BYR5 136 aa0.83□□□□□ -2.28
SCN3A-209ENST00000639244 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
SCN3A-209ENST00000639244 KRTAP20-2Q3LI61 65 aa0.83□□□□□ -2.28
SCN3A-209ENST00000639244 HMCN1Q96RW7 5635 aa0.78□□□□□ -2.28
SCN3A-209ENST00000639244 NEBP20929 6669 aa0.78□□□□□ -2.29
SCN3A-209ENST00000639244 AHNAKQ09666 5890 aaKnown RBP0.77□□□□□ -2.29
SCN3A-209ENST00000639244 KRTAP5-10Q6L8G5 202 aa0.75□□□□□ -2.29
SCN3A-209ENST00000639244 MUC5ACP98088 5654 aa0.72□□□□□ -2.29
SCN3A-209ENST00000639244 KRTAP5-1Q6L8H4 278 aa0.69□□□□□ -2.3
SCN3A-209ENST00000639244 KRTAP5-8O75690 187 aa0.68□□□□□ -2.3
SCN3A-209ENST00000639244 KRTAP5-7Q6L8G8 165 aa0.6□□□□□ -2.31
SCN3A-209ENST00000639244 KRTAP5-11Q6L8G4 156 aa0.56□□□□□ -2.32
SCN3A-209ENST00000639244 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
SCN3A-209ENST00000639244 KRTAP21-2Q3LI59 83 aa0.52□□□□□ -2.33
SCN3A-209ENST00000639244 MUC16Q8WXI7 14507 aa0.4□□□□□ -2.34
Retrieved 77 of 20,778 RNA–protein pairs in 30.1 ms