RNA–Protein interactions for RNA: ENST00000639244.1

SCN3A-209, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5 BASIC

Gene SCN3A, Length 8,854 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-209ENST00000639244 MYT1Q01538 1121 aa8.1□□□□□ -1.11
SCN3A-209ENST00000639244 PELP1Q8IZL8 1130 aaKnown RBP8□□□□□ -1.13
SCN3A-209ENST00000639244 TTBK1Q5TCY1 1321 aaPredicted RBP7.89□□□□□ -1.15
SCN3A-209ENST00000639244 SLC24A1O60721 1099 aa7.87□□□□□ -1.15
SCN3A-209ENST00000639244 ERICH6Q7L0X2 663 aa7.59□□□□□ -1.19
SCN3A-209ENST00000639244 DAXXQ9UER7 740 aaPredicted RBP7.36□□□□□ -1.23
SCN3A-209ENST00000639244 APLP2Q06481 763 aa7.25□□□□□ -1.25
SCN3A-209ENST00000639244 PRKCSHP14314 528 aaPredicted RBP7.25□□□□□ -1.25
SCN3A-209ENST00000639244 RANGAP1P46060 587 aaPredicted RBP7.1□□□□□ -1.27
SCN3A-209ENST00000639244 EIF5BO60841 1220 aaKnown RBP7.02□□□□□ -1.29
SCN3A-209ENST00000639244 NCBP3Q53F19 620 aaKnown RBP7.01□□□□□ -1.29
SCN3A-209ENST00000639244 EHMT2Q96KQ7 1210 aa6.99□□□□□ -1.29
SCN3A-209ENST00000639244 BCL11AQ9H165 835 aa6.9□□□□□ -1.3
SCN3A-209ENST00000639244 ARXQ96QS3 562 aa6.9□□□□□ -1.3
SCN3A-209ENST00000639244 RTN4Q9NQC3 1192 aaKnown RBP6.81□□□□□ -1.32
SCN3A-209ENST00000639244 AMER1Q5JTC6 1135 aaPredicted RBP6.79□□□□□ -1.32
SCN3A-209ENST00000639244 CENPBP07199 599 aaPredicted RBP6.79□□□□□ -1.32
SCN3A-209ENST00000639244 PLPPR3Q6T4P5 718 aa6.76□□□□□ -1.33
SCN3A-209ENST00000639244 HOMEZQ8IX15 550 aa6.7□□□□□ -1.34
SCN3A-209ENST00000639244 TULP1O00294 542 aaPredicted RBP6.63□□□□□ -1.35
SCN3A-209ENST00000639244 PODXL2Q9NZ53 605 aa6.62□□□□□ -1.35
SCN3A-209ENST00000639244 FAM9AQ8IZU1 332 aaPredicted RBP6.61□□□□□ -1.35
SCN3A-209ENST00000639244 TIMELESSQ9UNS1 1208 aa6.6□□□□□ -1.35
SCN3A-209ENST00000639244 NEFLP07196 543 aa6.58□□□□□ -1.36
SCN3A-209ENST00000639244 DCAF8L2P0C7V8 631 aa6.54□□□□□ -1.36
SCN3A-209ENST00000639244 KLHL34Q8N239 644 aa6.53□□□□□ -1.36
SCN3A-209ENST00000639244 HRCP23327 699 aa6.52□□□□□ -1.37
SCN3A-209ENST00000639244 UBE2Q2Q8WVN8 375 aa6.52□□□□□ -1.37
SCN3A-209ENST00000639244 NPM2Q86SE8 214 aaKnown RBP6.51□□□□□ -1.37
SCN3A-209ENST00000639244 PLEKHG5O94827 1062 aa6.5□□□□□ -1.37
SCN3A-209ENST00000639244 BCANQ96GW7 911 aa6.49□□□□□ -1.37
SCN3A-209ENST00000639244 KAT6BQ8WYB5 2073 aa6.49□□□□□ -1.37
SCN3A-209ENST00000639244 TAOK2Q9UL54 1235 aa6.48□□□□□ -1.37
SCN3A-209ENST00000639244 PKNOX2Q96KN3 472 aa6.47□□□□□ -1.37
SCN3A-209ENST00000639244 SCAF1Q9H7N4 1312 aaKnown RBP6.47□□□□□ -1.37
SCN3A-209ENST00000639244 PDIA4P13667 645 aaKnown RBP6.45□□□□□ -1.38
SCN3A-209ENST00000639244 C14orf37Q86TY3 774 aa6.45□□□□□ -1.38
SCN3A-209ENST00000639244 GLIPR1L2Q4G1C9 344 aa6.44□□□□□ -1.38
SCN3A-209ENST00000639244 ANP32EQ9BTT0 268 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 FBXO3Q9UK99 471 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 TPRNQ4KMQ1 711 aa6.41□□□□□ -1.38
SCN3A-209ENST00000639244 PDE4CQ08493 712 aa6.4□□□□□ -1.39
SCN3A-209ENST00000639244 GTF3C3Q9Y5Q9 886 aa6.39□□□□□ -1.39
SCN3A-209ENST00000639244 ZNF326Q5BKZ1 582 aaKnown RBP6.38□□□□□ -1.39
SCN3A-209ENST00000639244 MYT1LQ9UL68 1186 aa6.38□□□□□ -1.39
SCN3A-209ENST00000639244 TAF7LQ5H9L4 462 aa6.37□□□□□ -1.39
SCN3A-209ENST00000639244 CLSPNQ9HAW4 1339 aa6.36□□□□□ -1.39
SCN3A-209ENST00000639244 CDK11AQ9UQ88 783 aaPredicted RBP6.36□□□□□ -1.39
SCN3A-209ENST00000639244 CDK11BP21127 795 aaKnown RBP6.35□□□□□ -1.39
SCN3A-209ENST00000639244 KCNA4P22459 653 aa6.35□□□□□ -1.39
SCN3A-209ENST00000639244 ERICH6BQ5W0A0 696 aa6.35□□□□□ -1.39
SCN3A-209ENST00000639244 HMGB1P09429 215 aaKnown RBP6.34□□□□□ -1.4
SCN3A-209ENST00000639244 BRD2P25440 801 aaKnown RBP6.32□□□□□ -1.4
SCN3A-209ENST00000639244 CHIC1Q5VXU3 224 aa6.32□□□□□ -1.4
SCN3A-209ENST00000639244 HAP1P54257 671 aaPredicted RBP6.29□□□□□ -1.4
SCN3A-209ENST00000639244 ZEB1P37275 1124 aaPredicted RBP6.28□□□□□ -1.4
SCN3A-209ENST00000639244 YTHDC1Q96MU7 727 aaKnown RBP6.27□□□□□ -1.41
SCN3A-209ENST00000639244 POLR3GLQ9BT43 218 aa6.27□□□□□ -1.41
SCN3A-209ENST00000639244 ACIN1Q9UKV3 1341 aaKnown RBP6.25□□□□□ -1.41
SCN3A-209ENST00000639244 SHROOM4Q9ULL8 1493 aa6.24□□□□□ -1.41
SCN3A-209ENST00000639244 CSRNP3Q8WYN3 585 aa6.23□□□□□ -1.41
SCN3A-209ENST00000639244 HSP90B1P14625 803 aaKnown RBP6.23□□□□□ -1.41
SCN3A-209ENST00000639244 NAP1L5Q96NT1 182 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-209ENST00000639244 ANO8Q9HCE9 1232 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-209ENST00000639244 CHMP4AQ9BY43 222 aa6.2□□□□□ -1.42
SCN3A-209ENST00000639244 FGD1P98174 961 aa6.19□□□□□ -1.42
SCN3A-209ENST00000639244 TRIM26Q12899 539 aaPredicted RBP6.16□□□□□ -1.42
SCN3A-209ENST00000639244 PLCB2Q00722 1185 aa6.15□□□□□ -1.42
SCN3A-209ENST00000639244 A0A0U1RQG5 324 aaPredicted RBP6.15□□□□□ -1.43
SCN3A-209ENST00000639244 CCDC136Q96JN2 1154 aa6.14□□□□□ -1.43
SCN3A-209ENST00000639244 BCCIPQ9P287 314 aaKnown RBP eCLIP6.14□□□□□ -1.43
SCN3A-209ENST00000639244 SUPT5HO00267 1087 aaKnown RBP6.13□□□□□ -1.43
SCN3A-209ENST00000639244 TMEM132AQ24JP5 1023 aa6.13□□□□□ -1.43
SCN3A-209ENST00000639244 LOC105371045A0A1W2PR82 267 aa6.13□□□□□ -1.43
SCN3A-209ENST00000639244 DHX37Q8IY37 1157 aaKnown RBP6.12□□□□□ -1.43
SCN3A-209ENST00000639244 BCL11BQ9C0K0 894 aaPredicted RBP6.12□□□□□ -1.43
SCN3A-209ENST00000639244 RTL5Q5HYW3 569 aaPredicted RBP6.11□□□□□ -1.43
SCN3A-209ENST00000639244 CCER1Q8TC90 406 aaPredicted RBP6.1□□□□□ -1.43
SCN3A-209ENST00000639244 CNKSR2Q8WXI2 1034 aa6.1□□□□□ -1.43
SCN3A-209ENST00000639244 CCDC9Q9Y3X0 531 aaKnown RBP6.09□□□□□ -1.43
SCN3A-209ENST00000639244 PPARGC1BQ86YN6 1023 aaKnown RBP6.06□□□□□ -1.44
SCN3A-209ENST00000639244 SALL2Q9Y467 1007 aaPredicted RBP6.06□□□□□ -1.44
SCN3A-209ENST00000639244 NCLP19338 710 aaKnown RBP6.05□□□□□ -1.44
SCN3A-209ENST00000639244 DEKP35659 375 aaKnown RBP6.05□□□□□ -1.44
SCN3A-209ENST00000639244 SAMD1Q6SPF0 538 aaPredicted RBP6.04□□□□□ -1.44
SCN3A-209ENST00000639244 RSPH4AQ5TD94 716 aa6.04□□□□□ -1.44
SCN3A-209ENST00000639244 PAXIP1Q6ZW49 1069 aaPredicted RBP6.04□□□□□ -1.44
SCN3A-209ENST00000639244 NEUROD1Q13562 356 aa6.03□□□□□ -1.44
SCN3A-209ENST00000639244 AAMPQ13685 434 aa6.03□□□□□ -1.44
SCN3A-209ENST00000639244 CLSTN1O94985 981 aa6.02□□□□□ -1.45
SCN3A-209ENST00000639244 PTMSP20962 102 aa6.02□□□□□ -1.45
SCN3A-209ENST00000639244 AEBP2Q6ZN18 517 aaPredicted RBP6.02□□□□□ -1.45
SCN3A-209ENST00000639244 PCGF6Q9BYE7 350 aa6.01□□□□□ -1.45
SCN3A-209ENST00000639244 RBM10P98175 930 aaKnown RBP6□□□□□ -1.45
SCN3A-209ENST00000639244 CNGB1Q14028 1251 aaPredicted RBP6□□□□□ -1.45
SCN3A-209ENST00000639244 PSMD1Q99460 953 aa6□□□□□ -1.45
SCN3A-209ENST00000639244 VSIG10Q8N0Z9 540 aa5.99□□□□□ -1.45
SCN3A-209ENST00000639244 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.99□□□□□ -1.45
SCN3A-209ENST00000639244 RSPH6AQ9H0K4 717 aa5.99□□□□□ -1.45
SCN3A-209ENST00000639244 ARID4BQ4LE39 1312 aaPredicted RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms