RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 MT1EP04732 61 aa4.64□□□□□ -1.67
PDLIM2-220ENST00000622226 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
PDLIM2-220ENST00000622226 MT3P25713 68 aa4.63□□□□□ -1.67
PDLIM2-220ENST00000622226 HERC2O95714 4834 aa4.6□□□□□ -1.67
PDLIM2-220ENST00000622226 LCE5AQ5TCM9 118 aa4.59□□□□□ -1.67
PDLIM2-220ENST00000622226 FSIP2Q5CZC0 6907 aa4.57□□□□□ -1.68
PDLIM2-220ENST00000622226 SYNE2Q8WXH0 6885 aaKnown RBP4.57□□□□□ -1.68
PDLIM2-220ENST00000622226 KMT2CQ8NEZ4 4911 aaKnown RBP4.57□□□□□ -1.68
PDLIM2-220ENST00000622226 MT1MQ8N339 61 aa4.54□□□□□ -1.68
PDLIM2-220ENST00000622226 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
PDLIM2-220ENST00000622226 PCLOQ9Y6V0 5065 aa4.45□□□□□ -1.7
PDLIM2-220ENST00000622226 FLGP20930 4061 aaPredicted RBP4.45□□□□□ -1.7
PDLIM2-220ENST00000622226 MUC17Q685J3 4493 aa4.42□□□□□ -1.7
PDLIM2-220ENST00000622226 ABCA13Q86UQ4 5058 aa4.4□□□□□ -1.7
PDLIM2-220ENST00000622226 EPPK1P58107 5090 aaKnown RBP4.37□□□□□ -1.71
PDLIM2-220ENST00000622226 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.36□□□□□ -1.71
PDLIM2-220ENST00000622226 LCE1CQ5T751 118 aa4.35□□□□□ -1.71
PDLIM2-220ENST00000622226 LCE1EQ5T753 118 aa4.35□□□□□ -1.71
PDLIM2-220ENST00000622226 LCE1FQ5T754 118 aa4.35□□□□□ -1.71
PDLIM2-220ENST00000622226 LCE1AQ5T7P2 110 aa4.35□□□□□ -1.71
PDLIM2-220ENST00000622226 KRTAP19-2Q3LHN2 52 aa4.33□□□□□ -1.72
PDLIM2-220ENST00000622226 KRTAP2-3P0C7H8 128 aa4.29□□□□□ -1.72
PDLIM2-220ENST00000622226 KRTAP2-4Q9BYR9 128 aa4.29□□□□□ -1.72
PDLIM2-220ENST00000622226 KRTAP2-1Q9BYU5 128 aa4.29□□□□□ -1.72
PDLIM2-220ENST00000622226 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
PDLIM2-220ENST00000622226 LCE2AQ5TA79 106 aaPredicted RBP4.23□□□□□ -1.73
PDLIM2-220ENST00000622226 MT1AP04731 61 aa4.22□□□□□ -1.73
PDLIM2-220ENST00000622226 KRTAP19-7Q3SYF9 63 aa4.15□□□□□ -1.74
PDLIM2-220ENST00000622226 KRTAP6-3Q3LI67 103 aa4.15□□□□□ -1.74
PDLIM2-220ENST00000622226 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
PDLIM2-220ENST00000622226 KRTAP2-2Q9BYT5 123 aa4.1□□□□□ -1.75
PDLIM2-220ENST00000622226 RNF213Q63HN8 5207 aa4.09□□□□□ -1.75
PDLIM2-220ENST00000622226 UBR4Q5T4S7 5183 aa4.08□□□□□ -1.76
PDLIM2-220ENST00000622226 HMCN2Q8NDA2 5059 aa4.07□□□□□ -1.76
PDLIM2-220ENST00000622226 KRTAP6-1Q3LI64 71 aa4.05□□□□□ -1.76
PDLIM2-220ENST00000622226 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
PDLIM2-220ENST00000622226 MUC2Q02817 5179 aa3.98□□□□□ -1.77
PDLIM2-220ENST00000622226 FAT4Q6V0I7 4981 aa3.98□□□□□ -1.77
PDLIM2-220ENST00000622226 LCE4AQ5TA78 99 aa3.97□□□□□ -1.77
PDLIM2-220ENST00000622226 KRTAP9-4Q9BYQ2 154 aa3.9□□□□□ -1.79
PDLIM2-220ENST00000622226 KRTAP9-9Q9BYP9 154 aa3.86□□□□□ -1.79
PDLIM2-220ENST00000622226 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.81
PDLIM2-220ENST00000622226 KRTAP4-6Q9BYQ5 205 aa3.64□□□□□ -1.83
PDLIM2-220ENST00000622226 DSTQ03001 7570 aaKnown RBP3.64□□□□□ -1.83
PDLIM2-220ENST00000622226 FCGBPQ9Y6R7 5405 aaPredicted RBP3.62□□□□□ -1.83
PDLIM2-220ENST00000622226 KRTAP4-12Q9BQ66 201 aa3.57□□□□□ -1.84
PDLIM2-220ENST00000622226 KRTAP4-2Q9BYR5 136 aa3.57□□□□□ -1.84
PDLIM2-220ENST00000622226 MUC19Q7Z5P9 8384 aa3.55□□□□□ -1.84
PDLIM2-220ENST00000622226 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
PDLIM2-220ENST00000622226 USH2AO75445 5202 aa3.53□□□□□ -1.84
PDLIM2-220ENST00000622226 KMT2DO14686 5537 aa3.49□□□□□ -1.85
PDLIM2-220ENST00000622226 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
PDLIM2-220ENST00000622226 MACF1Q9UPN3 7388 aaKnown RBP3.48□□□□□ -1.85
PDLIM2-220ENST00000622226 NEBP20929 6669 aa3.42□□□□□ -1.86
PDLIM2-220ENST00000622226 SSPOA2VEC9 5147 aa3.34□□□□□ -1.88
PDLIM2-220ENST00000622226 KRTAP5-9P26371 169 aa3.15□□□□□ -1.91
PDLIM2-220ENST00000622226 MUC12Q9UKN1 5478 aa3.09□□□□□ -1.91
PDLIM2-220ENST00000622226 KRTAP5-5Q701N2 237 aaPredicted RBP3.02□□□□□ -1.93
PDLIM2-220ENST00000622226 KRTAP5-4Q6L8H1 288 aa2.96□□□□□ -1.94
PDLIM2-220ENST00000622226 MDN1Q9NU22 5596 aa2.91□□□□□ -1.94
PDLIM2-220ENST00000622226 KRTAP5-3Q6L8H2 238 aa2.79□□□□□ -1.96
PDLIM2-220ENST00000622226 PHGR1C9JFL3 82 aa2.76□□□□□ -1.97
PDLIM2-220ENST00000622226 GPR98Q8WXG9 6306 aa2.67□□□□□ -1.98
PDLIM2-220ENST00000622226 KRTAP5-8O75690 187 aa2.63□□□□□ -1.99
PDLIM2-220ENST00000622226 MUC5ACP98088 5654 aa2.53□□□□□ -2
PDLIM2-220ENST00000622226 AHNAK2Q8IVF2 5795 aa2.4□□□□□ -2.02
PDLIM2-220ENST00000622226 KRTAP5-2Q701N4 177 aa2.35□□□□□ -2.03
PDLIM2-220ENST00000622226 HMCN1Q96RW7 5635 aa2.33□□□□□ -2.04
PDLIM2-220ENST00000622226 KRTAP5-10Q6L8G5 202 aa2.31□□□□□ -2.04
PDLIM2-220ENST00000622226 KRTAP5-1Q6L8H4 278 aa2.04□□□□□ -2.08
PDLIM2-220ENST00000622226 AHNAKQ09666 5890 aaKnown RBP2.04□□□□□ -2.08
PDLIM2-220ENST00000622226 MUC5BQ9HC84 5762 aaPredicted RBP1.96□□□□□ -2.1
PDLIM2-220ENST00000622226 KRTAP5-11Q6L8G4 156 aa1.94□□□□□ -2.1
PDLIM2-220ENST00000622226 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
PDLIM2-220ENST00000622226 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
PDLIM2-220ENST00000622226 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
PDLIM2-220ENST00000622226 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
PDLIM2-220ENST00000622226 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 6.7 ms