RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 UBR4Q5T4S7 5183 aa4.43□□□□□ -1.7
GGA3-220ENST00000613421 KRTAP19-6Q3LI70 58 aa4.42□□□□□ -1.7
GGA3-220ENST00000613421 LCE3DQ9BYE3 92 aa4.41□□□□□ -1.7
GGA3-220ENST00000613421 LCE2AQ5TA79 106 aaPredicted RBP4.39□□□□□ -1.71
GGA3-220ENST00000613421 MT1MQ8N339 61 aa4.38□□□□□ -1.71
GGA3-220ENST00000613421 LCE3EQ5T5B0 92 aa4.34□□□□□ -1.71
GGA3-220ENST00000613421 KRTAP19-7Q3SYF9 63 aa4.33□□□□□ -1.72
GGA3-220ENST00000613421 LOC100996750A0A140TA64 210 aa4.29□□□□□ -1.72
GGA3-220ENST00000613421 KRTAP4-3Q9BYR4 195 aa4.28□□□□□ -1.72
GGA3-220ENST00000613421 MUC2Q02817 5179 aa4.27□□□□□ -1.73
GGA3-220ENST00000613421 LCE2DQ5TA82 110 aaPredicted RBP4.27□□□□□ -1.73
GGA3-220ENST00000613421 FSIP2Q5CZC0 6907 aa4.24□□□□□ -1.73
GGA3-220ENST00000613421 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
GGA3-220ENST00000613421 KRTAP9-7A8MTY7 169 aa4.2□□□□□ -1.74
GGA3-220ENST00000613421 KRTAP2-3P0C7H8 128 aa4.13□□□□□ -1.75
GGA3-220ENST00000613421 KRTAP2-4Q9BYR9 128 aa4.13□□□□□ -1.75
GGA3-220ENST00000613421 KRTAP2-1Q9BYU5 128 aa4.13□□□□□ -1.75
GGA3-220ENST00000613421 MT3P25713 68 aa4.11□□□□□ -1.75
GGA3-220ENST00000613421 KRTAP9-6A8MVA2 160 aa4.05□□□□□ -1.76
GGA3-220ENST00000613421 MT1AP04731 61 aa4.05□□□□□ -1.76
GGA3-220ENST00000613421 PRM1P04553 51 aa4.01□□□□□ -1.77
GGA3-220ENST00000613421 KRTAP20-1Q3LI63 56 aa4□□□□□ -1.77
GGA3-220ENST00000613421 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.99□□□□□ -1.77
GGA3-220ENST00000613421 MT4P47944 62 aa3.98□□□□□ -1.77
GGA3-220ENST00000613421 SYNE2Q8WXH0 6885 aaKnown RBP3.95□□□□□ -1.78
GGA3-220ENST00000613421 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
GGA3-220ENST00000613421 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.79
GGA3-220ENST00000613421 KRTAP6-3Q3LI67 103 aa3.87□□□□□ -1.79
GGA3-220ENST00000613421 KRTAP6-1Q3LI64 71 aa3.85□□□□□ -1.79
GGA3-220ENST00000613421 USH2AO75445 5202 aa3.85□□□□□ -1.79
GGA3-220ENST00000613421 LCE1AQ5T7P2 110 aa3.85□□□□□ -1.79
GGA3-220ENST00000613421 LCE1DQ5T752 114 aa3.79□□□□□ -1.8
GGA3-220ENST00000613421 LCE1BQ5T7P3 118 aa3.76□□□□□ -1.81
GGA3-220ENST00000613421 OBSCNQ5VST9 7968 aa3.74□□□□□ -1.81
GGA3-220ENST00000613421 KMT2DO14686 5537 aa3.74□□□□□ -1.81
GGA3-220ENST00000613421 KRTAP9-4Q9BYQ2 154 aa3.73□□□□□ -1.81
GGA3-220ENST00000613421 KRTAP6-2Q3LI66 62 aa3.71□□□□□ -1.82
GGA3-220ENST00000613421 FCGBPQ9Y6R7 5405 aaPredicted RBP3.71□□□□□ -1.82
GGA3-220ENST00000613421 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
GGA3-220ENST00000613421 DSTQ03001 7570 aaKnown RBP3.56□□□□□ -1.84
GGA3-220ENST00000613421 LCE4AQ5TA78 99 aa3.56□□□□□ -1.84
GGA3-220ENST00000613421 NEBP20929 6669 aa3.5□□□□□ -1.85
GGA3-220ENST00000613421 SSPOA2VEC9 5147 aa3.49□□□□□ -1.85
GGA3-220ENST00000613421 MACF1Q9UPN3 7388 aaKnown RBP3.46□□□□□ -1.86
GGA3-220ENST00000613421 MUC12Q9UKN1 5478 aa3.45□□□□□ -1.86
GGA3-220ENST00000613421 KRTAP5-9P26371 169 aa3.42□□□□□ -1.86
GGA3-220ENST00000613421 GPR98Q8WXG9 6306 aa3.33□□□□□ -1.88
GGA3-220ENST00000613421 MDN1Q9NU22 5596 aa3.19□□□□□ -1.9
GGA3-220ENST00000613421 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
GGA3-220ENST00000613421 LCE1EQ5T753 118 aa3.19□□□□□ -1.9
GGA3-220ENST00000613421 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
GGA3-220ENST00000613421 KRTAP4-6Q9BYQ5 205 aa3.17□□□□□ -1.9
GGA3-220ENST00000613421 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
GGA3-220ENST00000613421 MUC19Q7Z5P9 8384 aa3.08□□□□□ -1.92
GGA3-220ENST00000613421 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
GGA3-220ENST00000613421 KRTAP9-9Q9BYP9 154 aa2.98□□□□□ -1.93
GGA3-220ENST00000613421 KRTAP4-11Q9BYQ6 195 aa2.97□□□□□ -1.93
GGA3-220ENST00000613421 KRTAP5-4Q6L8H1 288 aa2.91□□□□□ -1.94
GGA3-220ENST00000613421 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
GGA3-220ENST00000613421 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
GGA3-220ENST00000613421 KRTAP5-3Q6L8H2 238 aa2.66□□□□□ -1.98
GGA3-220ENST00000613421 KRTAP4-12Q9BQ66 201 aa2.64□□□□□ -1.99
GGA3-220ENST00000613421 KRTAP4-2Q9BYR5 136 aa2.64□□□□□ -1.99
GGA3-220ENST00000613421 MUC5ACP98088 5654 aa2.62□□□□□ -1.99
GGA3-220ENST00000613421 HMCN1Q96RW7 5635 aa2.55□□□□□ -2
GGA3-220ENST00000613421 KRTAP5-2Q701N4 177 aa2.48□□□□□ -2.01
GGA3-220ENST00000613421 KRTAP5-10Q6L8G5 202 aa2.4□□□□□ -2.02
GGA3-220ENST00000613421 KRTAP5-8O75690 187 aa2.34□□□□□ -2.03
GGA3-220ENST00000613421 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
GGA3-220ENST00000613421 KRTAP5-7Q6L8G8 165 aa2.19□□□□□ -2.06
GGA3-220ENST00000613421 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.07
GGA3-220ENST00000613421 KRTAP5-1Q6L8H4 278 aa2.15□□□□□ -2.07
GGA3-220ENST00000613421 KRTAP5-11Q6L8G4 156 aa2.12□□□□□ -2.07
GGA3-220ENST00000613421 KRTAP21-2Q3LI59 83 aa2.09□□□□□ -2.07
GGA3-220ENST00000613421 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
GGA3-220ENST00000613421 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.99□□□□□ -2.09
GGA3-220ENST00000613421 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
GGA3-220ENST00000613421 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 120.9 ms