RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 FAT4Q6V0I7 4981 aa4.04□□□□□ -1.76
CHD4-211ENST00000544484 LOC100996750A0A140TA64 210 aa4.04□□□□□ -1.76
CHD4-211ENST00000544484 MT1MQ8N339 61 aa4.04□□□□□ -1.76
CHD4-211ENST00000544484 KRTAP4-3Q9BYR4 195 aa4.04□□□□□ -1.76
CHD4-211ENST00000544484 KRTAP19-6Q3LI70 58 aa4.02□□□□□ -1.77
CHD4-211ENST00000544484 KRTAP9-2Q9BYQ4 174 aa4.02□□□□□ -1.77
CHD4-211ENST00000544484 RNF213Q63HN8 5207 aa3.99□□□□□ -1.77
CHD4-211ENST00000544484 MT4P47944 62 aa3.98□□□□□ -1.77
CHD4-211ENST00000544484 HMCN2Q8NDA2 5059 aa3.97□□□□□ -1.77
CHD4-211ENST00000544484 MUC2Q02817 5179 aa3.93□□□□□ -1.78
CHD4-211ENST00000544484 LCE2AQ5TA79 106 aaPredicted RBP3.93□□□□□ -1.78
CHD4-211ENST00000544484 MT3P25713 68 aa3.89□□□□□ -1.79
CHD4-211ENST00000544484 KRTAP19-7Q3SYF9 63 aa3.88□□□□□ -1.79
CHD4-211ENST00000544484 PRM1P04553 51 aa3.8□□□□□ -1.8
CHD4-211ENST00000544484 LCE1BQ5T7P3 118 aa3.79□□□□□ -1.8
CHD4-211ENST00000544484 SYNE2Q8WXH0 6885 aaKnown RBP3.78□□□□□ -1.8
CHD4-211ENST00000544484 LCE1DQ5T752 114 aa3.78□□□□□ -1.8
CHD4-211ENST00000544484 KRTAP4-9Q9BYQ8 210 aa3.76□□□□□ -1.81
CHD4-211ENST00000544484 KRTAP9-6A0A140TA67 174 aa3.74□□□□□ -1.81
CHD4-211ENST00000544484 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
CHD4-211ENST00000544484 MT1AP04731 61 aa3.71□□□□□ -1.82
CHD4-211ENST00000544484 KRTAP2-3P0C7H8 128 aa3.67□□□□□ -1.82
CHD4-211ENST00000544484 KRTAP2-4Q9BYR9 128 aa3.67□□□□□ -1.82
CHD4-211ENST00000544484 KRTAP2-1Q9BYU5 128 aa3.67□□□□□ -1.82
CHD4-211ENST00000544484 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
CHD4-211ENST00000544484 KRTAP9-7A8MTY7 169 aa3.57□□□□□ -1.84
CHD4-211ENST00000544484 FCGBPQ9Y6R7 5405 aaPredicted RBP3.57□□□□□ -1.84
CHD4-211ENST00000544484 KRTAP6-1Q3LI64 71 aa3.56□□□□□ -1.84
CHD4-211ENST00000544484 KRTAP20-1Q3LI63 56 aa3.54□□□□□ -1.84
CHD4-211ENST00000544484 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
CHD4-211ENST00000544484 USH2AO75445 5202 aa3.51□□□□□ -1.85
CHD4-211ENST00000544484 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
CHD4-211ENST00000544484 LCE1AQ5T7P2 110 aa3.51□□□□□ -1.85
CHD4-211ENST00000544484 KRTAP6-3Q3LI67 103 aa3.5□□□□□ -1.85
CHD4-211ENST00000544484 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
CHD4-211ENST00000544484 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.47□□□□□ -1.85
CHD4-211ENST00000544484 KRTAP9-4Q9BYQ2 154 aa3.42□□□□□ -1.86
CHD4-211ENST00000544484 KMT2DO14686 5537 aa3.38□□□□□ -1.87
CHD4-211ENST00000544484 LCE4AQ5TA78 99 aa3.33□□□□□ -1.88
CHD4-211ENST00000544484 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
CHD4-211ENST00000544484 MACF1Q9UPN3 7388 aaKnown RBP3.32□□□□□ -1.88
CHD4-211ENST00000544484 LCE1CQ5T751 118 aa3.2□□□□□ -1.9
CHD4-211ENST00000544484 LCE1EQ5T753 118 aa3.2□□□□□ -1.9
CHD4-211ENST00000544484 LCE1FQ5T754 118 aa3.2□□□□□ -1.9
CHD4-211ENST00000544484 MUC12Q9UKN1 5478 aa3.15□□□□□ -1.9
CHD4-211ENST00000544484 SSPOA2VEC9 5147 aa3.13□□□□□ -1.91
CHD4-211ENST00000544484 NEBP20929 6669 aa3.03□□□□□ -1.92
CHD4-211ENST00000544484 MDN1Q9NU22 5596 aa3.03□□□□□ -1.92
CHD4-211ENST00000544484 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
CHD4-211ENST00000544484 KRTAP4-6Q9BYQ5 205 aa3□□□□□ -1.93
CHD4-211ENST00000544484 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
CHD4-211ENST00000544484 KRTAP9-9Q9BYP9 154 aa2.92□□□□□ -1.94
CHD4-211ENST00000544484 KRTAP20-2Q3LI61 65 aa2.88□□□□□ -1.95
CHD4-211ENST00000544484 KRTAP4-11Q9BYQ6 195 aa2.85□□□□□ -1.95
CHD4-211ENST00000544484 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
CHD4-211ENST00000544484 GPR98Q8WXG9 6306 aa2.7□□□□□ -1.98
CHD4-211ENST00000544484 KRTAP4-12Q9BQ66 201 aa2.69□□□□□ -1.98
CHD4-211ENST00000544484 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
CHD4-211ENST00000544484 KRTAP5-4Q6L8H1 288 aa2.61□□□□□ -1.99
CHD4-211ENST00000544484 KRTAP5-5Q701N2 237 aaPredicted RBP2.61□□□□□ -1.99
CHD4-211ENST00000544484 MUC5ACP98088 5654 aa2.54□□□□□ -2
CHD4-211ENST00000544484 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
CHD4-211ENST00000544484 KRTAP5-3Q6L8H2 238 aa2.35□□□□□ -2.03
CHD4-211ENST00000544484 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
CHD4-211ENST00000544484 KRTAP5-8O75690 187 aa2.19□□□□□ -2.06
CHD4-211ENST00000544484 KRTAP5-10Q6L8G5 202 aa2.09□□□□□ -2.07
CHD4-211ENST00000544484 KRTAP5-2Q701N4 177 aa2.06□□□□□ -2.08
CHD4-211ENST00000544484 MUC5BQ9HC84 5762 aaPredicted RBP1.95□□□□□ -2.1
CHD4-211ENST00000544484 AHNAKQ09666 5890 aaKnown RBP1.94□□□□□ -2.1
CHD4-211ENST00000544484 PHGR1C9JFL3 82 aa1.93□□□□□ -2.1
CHD4-211ENST00000544484 KRTAP5-1Q6L8H4 278 aa1.88□□□□□ -2.11
CHD4-211ENST00000544484 KRTAP5-11Q6L8G4 156 aa1.85□□□□□ -2.11
CHD4-211ENST00000544484 KRTAP21-2Q3LI59 83 aa1.8□□□□□ -2.12
CHD4-211ENST00000544484 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.59□□□□□ -2.15
CHD4-211ENST00000544484 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
CHD4-211ENST00000544484 KRTAP5-7Q6L8G8 165 aa1.47□□□□□ -2.17
CHD4-211ENST00000544484 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 16 ms