RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 FLGP20930 4061 aaPredicted RBP4.4□□□□□ -1.7
CHD4-210ENST00000544040 HYDINQ4G0P3 5121 aa4.37□□□□□ -1.71
CHD4-210ENST00000544040 KRTAP19-6Q3LI70 58 aa4.37□□□□□ -1.71
CHD4-210ENST00000544040 KRTAP2-3P0C7H8 128 aa4.36□□□□□ -1.71
CHD4-210ENST00000544040 KRTAP2-4Q9BYR9 128 aa4.36□□□□□ -1.71
CHD4-210ENST00000544040 KRTAP2-1Q9BYU5 128 aa4.36□□□□□ -1.71
CHD4-210ENST00000544040 PCLOQ9Y6V0 5065 aa4.35□□□□□ -1.71
CHD4-210ENST00000544040 MT1AP04731 61 aa4.35□□□□□ -1.71
CHD4-210ENST00000544040 KRTAP9-2Q9BYQ4 174 aa4.3□□□□□ -1.72
CHD4-210ENST00000544040 KRTAP19-7Q3SYF9 63 aa4.29□□□□□ -1.72
CHD4-210ENST00000544040 MUC17Q685J3 4493 aa4.29□□□□□ -1.72
CHD4-210ENST00000544040 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
CHD4-210ENST00000544040 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
CHD4-210ENST00000544040 BIRC6Q9NR09 4857 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 LCE1CQ5T751 118 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 LCE1EQ5T753 118 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 LCE1FQ5T754 118 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 LCE1AQ5T7P2 110 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
CHD4-210ENST00000544040 EPPK1P58107 5090 aaKnown RBP4.14□□□□□ -1.75
CHD4-210ENST00000544040 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
CHD4-210ENST00000544040 KRTAP20-1Q3LI63 56 aa4.06□□□□□ -1.76
CHD4-210ENST00000544040 SYNE1Q8NF91 8797 aaKnown RBP4.06□□□□□ -1.76
CHD4-210ENST00000544040 KRTAP9-6A8MVA2 160 aa4.06□□□□□ -1.76
CHD4-210ENST00000544040 KRTAP9-4Q9BYQ2 154 aa4.05□□□□□ -1.76
CHD4-210ENST00000544040 HMCN2Q8NDA2 5059 aa4□□□□□ -1.77
CHD4-210ENST00000544040 KRTAP9-6A0A140TA67 174 aa4□□□□□ -1.77
CHD4-210ENST00000544040 FSIP2Q5CZC0 6907 aa3.99□□□□□ -1.77
CHD4-210ENST00000544040 ABCA13Q86UQ4 5058 aa3.95□□□□□ -1.78
CHD4-210ENST00000544040 LCE4AQ5TA78 99 aa3.94□□□□□ -1.78
CHD4-210ENST00000544040 LCE2AQ5TA79 106 aaPredicted RBP3.92□□□□□ -1.78
CHD4-210ENST00000544040 MUC2Q02817 5179 aa3.88□□□□□ -1.79
CHD4-210ENST00000544040 FAT4Q6V0I7 4981 aa3.88□□□□□ -1.79
CHD4-210ENST00000544040 OBSCNQ5VST9 7968 aa3.87□□□□□ -1.79
CHD4-210ENST00000544040 UBR4Q5T4S7 5183 aa3.86□□□□□ -1.79
CHD4-210ENST00000544040 KRTAP2-2Q9BYT5 123 aa3.84□□□□□ -1.8
CHD4-210ENST00000544040 RNF213Q63HN8 5207 aa3.82□□□□□ -1.8
CHD4-210ENST00000544040 KRTAP6-3Q3LI67 103 aa3.78□□□□□ -1.81
CHD4-210ENST00000544040 KRTAP4-11Q9BYQ6 195 aa3.66□□□□□ -1.82
CHD4-210ENST00000544040 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.66□□□□□ -1.82
CHD4-210ENST00000544040 KRTAP9-9Q9BYP9 154 aa3.52□□□□□ -1.85
CHD4-210ENST00000544040 KRTAP20-2Q3LI61 65 aa3.46□□□□□ -1.86
CHD4-210ENST00000544040 FCGBPQ9Y6R7 5405 aaPredicted RBP3.44□□□□□ -1.86
CHD4-210ENST00000544040 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.86
CHD4-210ENST00000544040 USH2AO75445 5202 aa3.37□□□□□ -1.87
CHD4-210ENST00000544040 KMT2DO14686 5537 aa3.34□□□□□ -1.87
CHD4-210ENST00000544040 KRTAP4-6Q9BYQ5 205 aa3.32□□□□□ -1.88
CHD4-210ENST00000544040 DSTQ03001 7570 aaKnown RBP3.31□□□□□ -1.88
CHD4-210ENST00000544040 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
CHD4-210ENST00000544040 KRTAP4-2Q9BYR5 136 aa3.28□□□□□ -1.88
CHD4-210ENST00000544040 SSPOA2VEC9 5147 aa3.19□□□□□ -1.9
CHD4-210ENST00000544040 MACF1Q9UPN3 7388 aaKnown RBP3.15□□□□□ -1.9
CHD4-210ENST00000544040 NEBP20929 6669 aa3.09□□□□□ -1.92
CHD4-210ENST00000544040 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
CHD4-210ENST00000544040 KRTAP5-5Q701N2 237 aaPredicted RBP3.05□□□□□ -1.92
CHD4-210ENST00000544040 KRTAP5-9P26371 169 aa3.02□□□□□ -1.93
CHD4-210ENST00000544040 KRTAP5-4Q6L8H1 288 aa2.85□□□□□ -1.95
CHD4-210ENST00000544040 MUC12Q9UKN1 5478 aa2.85□□□□□ -1.95
CHD4-210ENST00000544040 MDN1Q9NU22 5596 aa2.68□□□□□ -1.98
CHD4-210ENST00000544040 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
CHD4-210ENST00000544040 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
CHD4-210ENST00000544040 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
CHD4-210ENST00000544040 KRTAP5-10Q6L8G5 202 aa2.35□□□□□ -2.03
CHD4-210ENST00000544040 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
CHD4-210ENST00000544040 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
CHD4-210ENST00000544040 KRTAP5-8O75690 187 aa2.32□□□□□ -2.04
CHD4-210ENST00000544040 HMCN1Q96RW7 5635 aa2.27□□□□□ -2.05
CHD4-210ENST00000544040 KRTAP5-1Q6L8H4 278 aa2.12□□□□□ -2.07
CHD4-210ENST00000544040 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
CHD4-210ENST00000544040 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
CHD4-210ENST00000544040 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
CHD4-210ENST00000544040 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
CHD4-210ENST00000544040 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
CHD4-210ENST00000544040 AHNAKQ09666 5890 aaKnown RBP1.82□□□□□ -2.12
CHD4-210ENST00000544040 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
CHD4-210ENST00000544040 KRTAP5-7Q6L8G8 165 aa1.53□□□□□ -2.16
CHD4-210ENST00000544040 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms