RNA–Protein interactions for RNA: ENST00000535302.6

SPG11-203, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-203ENST00000535302 KRTAP9-2Q9BYQ4 174 aa3.91□□□□□ -1.78
SPG11-203ENST00000535302 MT1MQ8N339 61 aa3.91□□□□□ -1.78
SPG11-203ENST00000535302 KRTAP4-9Q9BYQ8 210 aa3.9□□□□□ -1.78
SPG11-203ENST00000535302 MUC17Q685J3 4493 aa3.89□□□□□ -1.79
SPG11-203ENST00000535302 LCE5AQ5TCM9 118 aa3.85□□□□□ -1.79
SPG11-203ENST00000535302 MT3P25713 68 aa3.81□□□□□ -1.8
SPG11-203ENST00000535302 FSIP2Q5CZC0 6907 aa3.8□□□□□ -1.8
SPG11-203ENST00000535302 KRTAP19-6Q3LI70 58 aa3.78□□□□□ -1.81
SPG11-203ENST00000535302 EPPK1P58107 5090 aaKnown RBP3.76□□□□□ -1.81
SPG11-203ENST00000535302 SYNE2Q8WXH0 6885 aaKnown RBP3.76□□□□□ -1.81
SPG11-203ENST00000535302 ABCA13Q86UQ4 5058 aa3.73□□□□□ -1.81
SPG11-203ENST00000535302 FAT4Q6V0I7 4981 aa3.66□□□□□ -1.82
SPG11-203ENST00000535302 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.82
SPG11-203ENST00000535302 KRTAP19-7Q3SYF9 63 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 LCE1CQ5T751 118 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 LCE1EQ5T753 118 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 LCE1FQ5T754 118 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 LCE1AQ5T7P2 110 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 HMCN2Q8NDA2 5059 aa3.63□□□□□ -1.83
SPG11-203ENST00000535302 LCE2AQ5TA79 106 aaPredicted RBP3.58□□□□□ -1.84
SPG11-203ENST00000535302 MT1AP04731 61 aa3.56□□□□□ -1.84
SPG11-203ENST00000535302 KRTAP2-3P0C7H8 128 aa3.56□□□□□ -1.84
SPG11-203ENST00000535302 KRTAP2-4Q9BYR9 128 aa3.56□□□□□ -1.84
SPG11-203ENST00000535302 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
SPG11-203ENST00000535302 RNF213Q63HN8 5207 aa3.55□□□□□ -1.84
SPG11-203ENST00000535302 UBR4Q5T4S7 5183 aa3.55□□□□□ -1.84
SPG11-203ENST00000535302 KRTAP20-1Q3LI63 56 aa3.54□□□□□ -1.84
SPG11-203ENST00000535302 MUC2Q02817 5179 aa3.53□□□□□ -1.84
SPG11-203ENST00000535302 KRTAP6-1Q3LI64 71 aa3.48□□□□□ -1.85
SPG11-203ENST00000535302 KRTAP6-2Q3LI66 62 aa3.48□□□□□ -1.85
SPG11-203ENST00000535302 KRTAP9-7A8MTY7 169 aa3.47□□□□□ -1.85
SPG11-203ENST00000535302 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.86
SPG11-203ENST00000535302 LCE4AQ5TA78 99 aa3.39□□□□□ -1.87
SPG11-203ENST00000535302 SYNE1Q8NF91 8797 aaKnown RBP3.35□□□□□ -1.87
SPG11-203ENST00000535302 KRTAP9-4Q9BYQ2 154 aa3.34□□□□□ -1.87
SPG11-203ENST00000535302 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.33□□□□□ -1.88
SPG11-203ENST00000535302 KRTAP6-3Q3LI67 103 aa3.32□□□□□ -1.88
SPG11-203ENST00000535302 OBSCNQ5VST9 7968 aa3.24□□□□□ -1.89
SPG11-203ENST00000535302 KRTAP2-2Q9BYT5 123 aa3.19□□□□□ -1.9
SPG11-203ENST00000535302 KMT2DO14686 5537 aa3.16□□□□□ -1.9
SPG11-203ENST00000535302 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
SPG11-203ENST00000535302 FCGBPQ9Y6R7 5405 aaPredicted RBP3.08□□□□□ -1.92
SPG11-203ENST00000535302 USH2AO75445 5202 aa3.08□□□□□ -1.92
SPG11-203ENST00000535302 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
SPG11-203ENST00000535302 KRTAP9-9Q9BYP9 154 aa3.02□□□□□ -1.93
SPG11-203ENST00000535302 KRTAP4-4Q9BYR3 166 aa3□□□□□ -1.93
SPG11-203ENST00000535302 DSTQ03001 7570 aaKnown RBP2.96□□□□□ -1.94
SPG11-203ENST00000535302 KRTAP4-6Q9BYQ5 205 aa2.96□□□□□ -1.94
SPG11-203ENST00000535302 MACF1Q9UPN3 7388 aaKnown RBP2.95□□□□□ -1.94
SPG11-203ENST00000535302 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
SPG11-203ENST00000535302 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
SPG11-203ENST00000535302 SSPOA2VEC9 5147 aa2.89□□□□□ -1.95
SPG11-203ENST00000535302 NEBP20929 6669 aa2.83□□□□□ -1.96
SPG11-203ENST00000535302 MUC12Q9UKN1 5478 aa2.72□□□□□ -1.97
SPG11-203ENST00000535302 KRTAP5-9P26371 169 aa2.71□□□□□ -1.98
SPG11-203ENST00000535302 KRTAP5-5Q701N2 237 aaPredicted RBP2.49□□□□□ -2.01
SPG11-203ENST00000535302 MDN1Q9NU22 5596 aa2.48□□□□□ -2.01
SPG11-203ENST00000535302 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
SPG11-203ENST00000535302 KRTAP5-4Q6L8H1 288 aa2.48□□□□□ -2.01
SPG11-203ENST00000535302 MUC5ACP98088 5654 aa2.22□□□□□ -2.05
SPG11-203ENST00000535302 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
SPG11-203ENST00000535302 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
SPG11-203ENST00000535302 KRTAP5-8O75690 187 aa2.09□□□□□ -2.08
SPG11-203ENST00000535302 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
SPG11-203ENST00000535302 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
SPG11-203ENST00000535302 KRTAP5-10Q6L8G5 202 aa1.94□□□□□ -2.1
SPG11-203ENST00000535302 KRTAP5-2Q701N4 177 aa1.9□□□□□ -2.11
SPG11-203ENST00000535302 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
SPG11-203ENST00000535302 KRTAP5-1Q6L8H4 278 aa1.8□□□□□ -2.12
SPG11-203ENST00000535302 MUC5BQ9HC84 5762 aaPredicted RBP1.78□□□□□ -2.12
SPG11-203ENST00000535302 KRTAP21-2Q3LI59 83 aa1.65□□□□□ -2.14
SPG11-203ENST00000535302 KRTAP5-11Q6L8G4 156 aa1.65□□□□□ -2.15
SPG11-203ENST00000535302 AHNAKQ09666 5890 aaKnown RBP1.64□□□□□ -2.15
SPG11-203ENST00000535302 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
SPG11-203ENST00000535302 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.4□□□□□ -2.19
SPG11-203ENST00000535302 KRTAP5-7Q6L8G8 165 aa1.36□□□□□ -2.19
SPG11-203ENST00000535302 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 12.8 ms