RNA–Protein interactions for RNA: ENST00000531270.5

LRRK1-207, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best)

Gene LRRK1, Length 6,015 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-207ENST00000531270 LCE5AQ5TCM9 118 aa4.42□□□□□ -1.7
LRRK1-207ENST00000531270 KRTAP9-2Q9BYQ4 174 aa4.41□□□□□ -1.7
LRRK1-207ENST00000531270 KRTAP9-6A0A140TA67 174 aa4.34□□□□□ -1.71
LRRK1-207ENST00000531270 FLGP20930 4061 aaPredicted RBP4.32□□□□□ -1.72
LRRK1-207ENST00000531270 MUC17Q685J3 4493 aa4.31□□□□□ -1.72
LRRK1-207ENST00000531270 KRTAP4-9Q9BYQ8 210 aa4.3□□□□□ -1.72
LRRK1-207ENST00000531270 KRTAP19-2Q3LHN2 52 aa4.28□□□□□ -1.72
LRRK1-207ENST00000531270 KRTAP19-6Q3LI70 58 aa4.27□□□□□ -1.73
LRRK1-207ENST00000531270 PCLOQ9Y6V0 5065 aa4.23□□□□□ -1.73
LRRK1-207ENST00000531270 EPPK1P58107 5090 aaKnown RBP4.22□□□□□ -1.73
LRRK1-207ENST00000531270 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
LRRK1-207ENST00000531270 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
LRRK1-207ENST00000531270 LCE1EQ5T753 118 aa4.15□□□□□ -1.75
LRRK1-207ENST00000531270 LCE1FQ5T754 118 aa4.15□□□□□ -1.75
LRRK1-207ENST00000531270 LCE1AQ5T7P2 110 aa4.15□□□□□ -1.75
LRRK1-207ENST00000531270 MT1AP04731 61 aa4.15□□□□□ -1.75
LRRK1-207ENST00000531270 KRTAP2-3P0C7H8 128 aa4.1□□□□□ -1.75
LRRK1-207ENST00000531270 KRTAP2-4Q9BYR9 128 aa4.1□□□□□ -1.75
LRRK1-207ENST00000531270 KRTAP2-1Q9BYU5 128 aa4.1□□□□□ -1.75
LRRK1-207ENST00000531270 ABCA13Q86UQ4 5058 aa4.07□□□□□ -1.76
LRRK1-207ENST00000531270 FSIP2Q5CZC0 6907 aa4.05□□□□□ -1.76
LRRK1-207ENST00000531270 HMCN2Q8NDA2 5059 aa4.04□□□□□ -1.76
LRRK1-207ENST00000531270 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
LRRK1-207ENST00000531270 KRTAP9-7A8MTY7 169 aa3.99□□□□□ -1.77
LRRK1-207ENST00000531270 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
LRRK1-207ENST00000531270 LCE2AQ5TA79 106 aaPredicted RBP3.98□□□□□ -1.77
LRRK1-207ENST00000531270 MUC2Q02817 5179 aa3.98□□□□□ -1.77
LRRK1-207ENST00000531270 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
LRRK1-207ENST00000531270 FAT4Q6V0I7 4981 aa3.97□□□□□ -1.77
LRRK1-207ENST00000531270 SYNE1Q8NF91 8797 aaKnown RBP3.94□□□□□ -1.78
LRRK1-207ENST00000531270 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
LRRK1-207ENST00000531270 UBR4Q5T4S7 5183 aa3.87□□□□□ -1.79
LRRK1-207ENST00000531270 KRTAP9-4Q9BYQ2 154 aa3.85□□□□□ -1.79
LRRK1-207ENST00000531270 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
LRRK1-207ENST00000531270 RNF213Q63HN8 5207 aa3.81□□□□□ -1.8
LRRK1-207ENST00000531270 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.8□□□□□ -1.8
LRRK1-207ENST00000531270 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
LRRK1-207ENST00000531270 LCE4AQ5TA78 99 aa3.78□□□□□ -1.8
LRRK1-207ENST00000531270 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
LRRK1-207ENST00000531270 OBSCNQ5VST9 7968 aa3.72□□□□□ -1.81
LRRK1-207ENST00000531270 KMT2DO14686 5537 aa3.69□□□□□ -1.82
LRRK1-207ENST00000531270 KRTAP9-9Q9BYP9 154 aa3.58□□□□□ -1.84
LRRK1-207ENST00000531270 KRTAP4-11Q9BYQ6 195 aa3.45□□□□□ -1.86
LRRK1-207ENST00000531270 FCGBPQ9Y6R7 5405 aaPredicted RBP3.4□□□□□ -1.86
LRRK1-207ENST00000531270 USH2AO75445 5202 aa3.39□□□□□ -1.87
LRRK1-207ENST00000531270 KRTAP20-2Q3LI61 65 aa3.38□□□□□ -1.87
LRRK1-207ENST00000531270 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
LRRK1-207ENST00000531270 KRTAP4-4Q9BYR3 166 aa3.28□□□□□ -1.89
LRRK1-207ENST00000531270 SSPOA2VEC9 5147 aa3.23□□□□□ -1.89
LRRK1-207ENST00000531270 KRTAP4-12Q9BQ66 201 aa3.21□□□□□ -1.89
LRRK1-207ENST00000531270 KRTAP4-6Q9BYQ5 205 aa3.21□□□□□ -1.89
LRRK1-207ENST00000531270 KRTAP4-2Q9BYR5 136 aa3.21□□□□□ -1.89
LRRK1-207ENST00000531270 MACF1Q9UPN3 7388 aaKnown RBP3.19□□□□□ -1.9
LRRK1-207ENST00000531270 KRTAP5-9P26371 169 aa3.12□□□□□ -1.91
LRRK1-207ENST00000531270 NEBP20929 6669 aa3.1□□□□□ -1.91
LRRK1-207ENST00000531270 MUC12Q9UKN1 5478 aa3.09□□□□□ -1.91
LRRK1-207ENST00000531270 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
LRRK1-207ENST00000531270 KRTAP5-5Q701N2 237 aaPredicted RBP2.83□□□□□ -1.96
LRRK1-207ENST00000531270 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
LRRK1-207ENST00000531270 GPR98Q8WXG9 6306 aa2.74□□□□□ -1.97
LRRK1-207ENST00000531270 MDN1Q9NU22 5596 aa2.67□□□□□ -1.98
LRRK1-207ENST00000531270 KRTAP5-3Q6L8H2 238 aa2.5□□□□□ -2.01
LRRK1-207ENST00000531270 PHGR1C9JFL3 82 aa2.4□□□□□ -2.03
LRRK1-207ENST00000531270 MUC5ACP98088 5654 aa2.38□□□□□ -2.03
LRRK1-207ENST00000531270 KRTAP5-8O75690 187 aa2.28□□□□□ -2.04
LRRK1-207ENST00000531270 AHNAK2Q8IVF2 5795 aa2.19□□□□□ -2.06
LRRK1-207ENST00000531270 HMCN1Q96RW7 5635 aa2.17□□□□□ -2.06
LRRK1-207ENST00000531270 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
LRRK1-207ENST00000531270 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
LRRK1-207ENST00000531270 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
LRRK1-207ENST00000531270 KRTAP5-7Q6L8G8 165 aa1.98□□□□□ -2.09
LRRK1-207ENST00000531270 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
LRRK1-207ENST00000531270 AHNAKQ09666 5890 aaKnown RBP1.86□□□□□ -2.11
LRRK1-207ENST00000531270 KRTAP5-11Q6L8G4 156 aa1.83□□□□□ -2.12
LRRK1-207ENST00000531270 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
LRRK1-207ENST00000531270 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
LRRK1-207ENST00000531270 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.56□□□□□ -2.16
LRRK1-207ENST00000531270 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 9.2 ms