RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 KRTAP19-3Q7Z4W3 81 aa4.5□□□□□ -1.69
SYNPO-205ENST00000522122 LCE3DQ9BYE3 92 aa4.48□□□□□ -1.69
SYNPO-205ENST00000522122 MUC2Q02817 5179 aa4.47□□□□□ -1.69
SYNPO-205ENST00000522122 KRTAP2-3P0C7H8 128 aa4.43□□□□□ -1.7
SYNPO-205ENST00000522122 KRTAP2-4Q9BYR9 128 aa4.43□□□□□ -1.7
SYNPO-205ENST00000522122 KRTAP2-1Q9BYU5 128 aa4.43□□□□□ -1.7
SYNPO-205ENST00000522122 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
SYNPO-205ENST00000522122 KRTAP19-7Q3SYF9 63 aa4.42□□□□□ -1.7
SYNPO-205ENST00000522122 UBR4Q5T4S7 5183 aa4.39□□□□□ -1.71
SYNPO-205ENST00000522122 LCE2AQ5TA79 106 aaPredicted RBP4.38□□□□□ -1.71
SYNPO-205ENST00000522122 MT1MQ8N339 61 aa4.33□□□□□ -1.72
SYNPO-205ENST00000522122 KRTAP9-6A8MVA2 160 aa4.31□□□□□ -1.72
SYNPO-205ENST00000522122 KRTAP19-6Q3LI70 58 aa4.3□□□□□ -1.72
SYNPO-205ENST00000522122 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
SYNPO-205ENST00000522122 KRTAP9-7A8MTY7 169 aa4.26□□□□□ -1.73
SYNPO-205ENST00000522122 KRTAP4-3Q9BYR4 195 aa4.23□□□□□ -1.73
SYNPO-205ENST00000522122 FSIP2Q5CZC0 6907 aa4.2□□□□□ -1.74
SYNPO-205ENST00000522122 KRTAP20-1Q3LI63 56 aa4.15□□□□□ -1.75
SYNPO-205ENST00000522122 MT3P25713 68 aa4.14□□□□□ -1.75
SYNPO-205ENST00000522122 PRM1P04553 51 aa4.09□□□□□ -1.75
SYNPO-205ENST00000522122 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.06□□□□□ -1.76
SYNPO-205ENST00000522122 KRTAP6-3Q3LI67 103 aa4.06□□□□□ -1.76
SYNPO-205ENST00000522122 MT1AP04731 61 aa4.02□□□□□ -1.77
SYNPO-205ENST00000522122 MT4P47944 62 aa4.01□□□□□ -1.77
SYNPO-205ENST00000522122 OBSCNQ5VST9 7968 aa3.99□□□□□ -1.77
SYNPO-205ENST00000522122 KRTAP4-9Q9BYQ8 210 aa3.96□□□□□ -1.78
SYNPO-205ENST00000522122 USH2AO75445 5202 aa3.92□□□□□ -1.78
SYNPO-205ENST00000522122 SYNE2Q8WXH0 6885 aaKnown RBP3.92□□□□□ -1.78
SYNPO-205ENST00000522122 LCE5AQ5TCM9 118 aa3.9□□□□□ -1.78
SYNPO-205ENST00000522122 KMT2DO14686 5537 aa3.88□□□□□ -1.79
SYNPO-205ENST00000522122 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
SYNPO-205ENST00000522122 LCE1DQ5T752 114 aa3.82□□□□□ -1.8
SYNPO-205ENST00000522122 FCGBPQ9Y6R7 5405 aaPredicted RBP3.82□□□□□ -1.8
SYNPO-205ENST00000522122 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
SYNPO-205ENST00000522122 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
SYNPO-205ENST00000522122 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
SYNPO-205ENST00000522122 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
SYNPO-205ENST00000522122 KRTAP9-4Q9BYQ2 154 aa3.69□□□□□ -1.82
SYNPO-205ENST00000522122 KRTAP6-2Q3LI66 62 aa3.69□□□□□ -1.82
SYNPO-205ENST00000522122 DSTQ03001 7570 aaKnown RBP3.68□□□□□ -1.82
SYNPO-205ENST00000522122 GPR98Q8WXG9 6306 aa3.67□□□□□ -1.82
SYNPO-205ENST00000522122 SSPOA2VEC9 5147 aa3.64□□□□□ -1.83
SYNPO-205ENST00000522122 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
SYNPO-205ENST00000522122 NEBP20929 6669 aa3.43□□□□□ -1.86
SYNPO-205ENST00000522122 KRTAP5-9P26371 169 aa3.43□□□□□ -1.86
SYNPO-205ENST00000522122 MUC12Q9UKN1 5478 aa3.39□□□□□ -1.87
SYNPO-205ENST00000522122 KRTAP5-5Q701N2 237 aaPredicted RBP3.36□□□□□ -1.87
SYNPO-205ENST00000522122 LCE1CQ5T751 118 aa3.33□□□□□ -1.88
SYNPO-205ENST00000522122 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
SYNPO-205ENST00000522122 LCE1FQ5T754 118 aa3.33□□□□□ -1.88
SYNPO-205ENST00000522122 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
SYNPO-205ENST00000522122 MUC19Q7Z5P9 8384 aa3.2□□□□□ -1.9
SYNPO-205ENST00000522122 MDN1Q9NU22 5596 aa3.18□□□□□ -1.9
SYNPO-205ENST00000522122 KRTAP4-6Q9BYQ5 205 aa3.09□□□□□ -1.91
SYNPO-205ENST00000522122 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
SYNPO-205ENST00000522122 KRTAP4-11Q9BYQ6 195 aa3.02□□□□□ -1.93
SYNPO-205ENST00000522122 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
SYNPO-205ENST00000522122 AHNAK2Q8IVF2 5795 aa2.77□□□□□ -1.97
SYNPO-205ENST00000522122 KRTAP5-3Q6L8H2 238 aa2.75□□□□□ -1.97
SYNPO-205ENST00000522122 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
SYNPO-205ENST00000522122 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
SYNPO-205ENST00000522122 MUC5ACP98088 5654 aa2.66□□□□□ -1.98
SYNPO-205ENST00000522122 HMCN1Q96RW7 5635 aa2.65□□□□□ -1.99
SYNPO-205ENST00000522122 KRTAP4-12Q9BQ66 201 aa2.64□□□□□ -1.99
SYNPO-205ENST00000522122 KRTAP4-2Q9BYR5 136 aa2.64□□□□□ -1.99
SYNPO-205ENST00000522122 KRTAP5-10Q6L8G5 202 aa2.56□□□□□ -2
SYNPO-205ENST00000522122 KRTAP5-8O75690 187 aa2.36□□□□□ -2.03
SYNPO-205ENST00000522122 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
SYNPO-205ENST00000522122 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
SYNPO-205ENST00000522122 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
SYNPO-205ENST00000522122 KRTAP21-2Q3LI59 83 aa2.24□□□□□ -2.05
SYNPO-205ENST00000522122 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
SYNPO-205ENST00000522122 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.19□□□□□ -2.06
SYNPO-205ENST00000522122 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
SYNPO-205ENST00000522122 KRTAP5-11Q6L8G4 156 aa2.14□□□□□ -2.07
SYNPO-205ENST00000522122 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
SYNPO-205ENST00000522122 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 34 ms