RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	LCE1D	Q5T752	114 aa		4.53	□□□□□ -1.68
TRIO-222	ENST00000515144	MT1M	Q8N339	61 aa		4.52	□□□□□ -1.69
TRIO-222	ENST00000515144	FSIP2	Q5CZC0	6907 aa		4.52	□□□□□ -1.69
TRIO-222	ENST00000515144	KRTAP9-7	A8MTY7	169 aa		4.49	□□□□□ -1.69
TRIO-222	ENST00000515144	LCE3E	Q5T5B0	92 aa		4.49	□□□□□ -1.69
TRIO-222	ENST00000515144	KRTAP20-1	Q3LI63	56 aa		4.48	□□□□□ -1.69
TRIO-222	ENST00000515144	LCE2A	Q5TA79	106 aa	Predicted RBP	4.44	□□□□□ -1.7
TRIO-222	ENST00000515144	LCE1C	Q5T751	118 aa		4.41	□□□□□ -1.7
TRIO-222	ENST00000515144	LCE1E	Q5T753	118 aa		4.41	□□□□□ -1.7
TRIO-222	ENST00000515144	LCE1F	Q5T754	118 aa		4.41	□□□□□ -1.7
TRIO-222	ENST00000515144	LCE1A	Q5T7P2	110 aa		4.41	□□□□□ -1.7
TRIO-222	ENST00000515144	HERC1	Q15751	4861 aa		4.39	□□□□□ -1.71
TRIO-222	ENST00000515144	HMCN2	Q8NDA2	5059 aa		4.39	□□□□□ -1.71
TRIO-222	ENST00000515144	BIRC6	Q9NR09	4857 aa		4.39	□□□□□ -1.71
TRIO-222	ENST00000515144	PCLO	Q9Y6V0	5065 aa		4.38	□□□□□ -1.71
TRIO-222	ENST00000515144	LCE5A	Q5TCM9	118 aa		4.38	□□□□□ -1.71
TRIO-222	ENST00000515144	MT3	P25713	68 aa		4.36	□□□□□ -1.71
TRIO-222	ENST00000515144	KRTAP4-9	Q9BYQ8	210 aa		4.36	□□□□□ -1.71
TRIO-222	ENST00000515144	EPPK1	P58107	5090 aa	Known RBP	4.29	□□□□□ -1.72
TRIO-222	ENST00000515144	PRM1	P04553	51 aa		4.27	□□□□□ -1.73
TRIO-222	ENST00000515144	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.26	□□□□□ -1.73
TRIO-222	ENST00000515144	MUC2	Q02817	5179 aa		4.23	□□□□□ -1.73
TRIO-222	ENST00000515144	KRTAP19-7	Q3SYF9	63 aa		4.18	□□□□□ -1.74
TRIO-222	ENST00000515144	KRTAP2-3	P0C7H8	128 aa		4.15	□□□□□ -1.75
TRIO-222	ENST00000515144	KRTAP2-4	Q9BYR9	128 aa		4.15	□□□□□ -1.75
TRIO-222	ENST00000515144	KRTAP6-3	Q3LI67	103 aa		4.1	□□□□□ -1.75
TRIO-222	ENST00000515144	KRTAP2-1	Q9BYU5	128 aa		4.07	□□□□□ -1.76
TRIO-222	ENST00000515144	KRTAP6-2	Q3LI66	62 aa		4.06	□□□□□ -1.76
TRIO-222	ENST00000515144	FAT4	Q6V0I7	4981 aa		4.05	□□□□□ -1.76
TRIO-222	ENST00000515144	MT1A	P04731	61 aa		4.02	□□□□□ -1.77
TRIO-222	ENST00000515144	KRTAP6-1	Q3LI64	71 aa		4	□□□□□ -1.77
TRIO-222	ENST00000515144	KRTAP2-2	Q9BYT5	123 aa		3.99	□□□□□ -1.77
TRIO-222	ENST00000515144	ABCA13	Q86UQ4	5058 aa		3.97	□□□□□ -1.77
TRIO-222	ENST00000515144	KMT2D	O14686	5537 aa		3.92	□□□□□ -1.78
TRIO-222	ENST00000515144	LCE4A	Q5TA78	99 aa		3.91	□□□□□ -1.78
TRIO-222	ENST00000515144	UBR4	Q5T4S7	5183 aa		3.88	□□□□□ -1.79
TRIO-222	ENST00000515144	KRTAP9-4	Q9BYQ2	154 aa		3.86	□□□□□ -1.79
TRIO-222	ENST00000515144	KRTAP9-9	Q9BYP9	154 aa		3.84	□□□□□ -1.79
TRIO-222	ENST00000515144	KRTAP9-6	A8MVA2	160 aa		3.79	□□□□□ -1.8
TRIO-222	ENST00000515144	RNF213	Q63HN8	5207 aa		3.69	□□□□□ -1.82
TRIO-222	ENST00000515144	KRTAP4-6	Q9BYQ5	205 aa		3.59	□□□□□ -1.83
TRIO-222	ENST00000515144	SYNE1	Q8NF91	8797 aa	Known RBP	3.58	□□□□□ -1.84
TRIO-222	ENST00000515144	MACF1	Q9UPN3	7388 aa	Known RBP	3.57	□□□□□ -1.84
TRIO-222	ENST00000515144	DST	Q03001	7570 aa	Known RBP	3.56	□□□□□ -1.84
TRIO-222	ENST00000515144	OBSCN	Q5VST9	7968 aa		3.47	□□□□□ -1.85
TRIO-222	ENST00000515144	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.44	□□□□□ -1.86
TRIO-222	ENST00000515144	KRTAP20-2	Q3LI61	65 aa		3.38	□□□□□ -1.87
TRIO-222	ENST00000515144	KRTAP4-2	Q9BYR5	136 aa		3.37	□□□□□ -1.87
TRIO-222	ENST00000515144	KRTAP5-9	P26371	169 aa		3.37	□□□□□ -1.87
TRIO-222	ENST00000515144	KRTAP4-12	Q9BQ66	201 aa		3.31	□□□□□ -1.88
TRIO-222	ENST00000515144	KRTAP4-4	Q9BYR3	166 aa		3.29	□□□□□ -1.88
TRIO-222	ENST00000515144	KRTAP4-11	Q9BYQ6	195 aa		3.27	□□□□□ -1.89
TRIO-222	ENST00000515144	USH2A	O75445	5202 aa		3.26	□□□□□ -1.89
TRIO-222	ENST00000515144	NEB	P20929	6669 aa		3.18	□□□□□ -1.9
TRIO-222	ENST00000515144	MUC12	Q9UKN1	5478 aa		3.16	□□□□□ -1.9
TRIO-222	ENST00000515144	SSPO	A2VEC9	5147 aa		3.15	□□□□□ -1.9
TRIO-222	ENST00000515144	KRTAP5-4	Q6L8H1	288 aa		3.04	□□□□□ -1.92
TRIO-222	ENST00000515144	GPR98	Q8WXG9	6306 aa		2.95	□□□□□ -1.94
TRIO-222	ENST00000515144	MUC19	Q7Z5P9	8384 aa		2.78	□□□□□ -1.96
TRIO-222	ENST00000515144	KRTAP5-3	Q6L8H2	238 aa		2.77	□□□□□ -1.97
TRIO-222	ENST00000515144	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.75	□□□□□ -1.97
TRIO-222	ENST00000515144	PHGR1	C9JFL3	82 aa		2.72	□□□□□ -1.97
TRIO-222	ENST00000515144	KRTAP5-8	O75690	187 aa		2.6	□□□□□ -1.99
TRIO-222	ENST00000515144	MDN1	Q9NU22	5596 aa		2.58	□□□□□ -2
TRIO-222	ENST00000515144	MUC5AC	P98088	5654 aa		2.45	□□□□□ -2.02
TRIO-222	ENST00000515144	HMCN1	Q96RW7	5635 aa		2.25	□□□□□ -2.05
TRIO-222	ENST00000515144	KRTAP5-2	Q701N4	177 aa		2.2	□□□□□ -2.06
TRIO-222	ENST00000515144	KRTAP5-10	Q6L8G5	202 aa		2.17	□□□□□ -2.06
TRIO-222	ENST00000515144	KRTAP5-1	Q6L8H4	278 aa		2.06	□□□□□ -2.08
TRIO-222	ENST00000515144	MUC5B	Q9HC84	5762 aa	Predicted RBP	2	□□□□□ -2.09
TRIO-222	ENST00000515144	KRTAP5-11	Q6L8G4	156 aa		1.97	□□□□□ -2.09
TRIO-222	ENST00000515144	KRTAP21-2	Q3LI59	83 aa		1.92	□□□□□ -2.1
TRIO-222	ENST00000515144	KRTAP21-1	Q3LI58	79 aa		1.86	□□□□□ -2.11
TRIO-222	ENST00000515144	AHNAK2	Q8IVF2	5795 aa		1.83	□□□□□ -2.12
TRIO-222	ENST00000515144	KRTAP5-7	Q6L8G8	165 aa		1.77	□□□□□ -2.13
TRIO-222	ENST00000515144	AHNAK	Q09666	5890 aa	Known RBP	1.7	□□□□□ -2.14
TRIO-222	ENST00000515144	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	1.67	□□□□□ -2.14
TRIO-222	ENST00000515144	MUC16	Q8WXI7	14507 aa		1.52	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 73.6 ms