RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 MUC2Q02817 5179 aa3.31□□□□□ -1.88
PDLIM3-209ENST00000514142 FAT4Q6V0I7 4981 aa3.28□□□□□ -1.88
PDLIM3-209ENST00000514142 PRM1P04553 51 aa3.28□□□□□ -1.88
PDLIM3-209ENST00000514142 KRTAP19-3Q7Z4W3 81 aa3.27□□□□□ -1.89
PDLIM3-209ENST00000514142 LOC100996750A0A140TA64 210 aa3.26□□□□□ -1.89
PDLIM3-209ENST00000514142 KRTAP4-6Q9BYQ5 205 aa3.26□□□□□ -1.89
PDLIM3-209ENST00000514142 MT1EP04732 61 aa3.25□□□□□ -1.89
PDLIM3-209ENST00000514142 LCE2AQ5TA79 106 aaPredicted RBP3.25□□□□□ -1.89
PDLIM3-209ENST00000514142 HMCN2Q8NDA2 5059 aa3.19□□□□□ -1.9
PDLIM3-209ENST00000514142 KRTAP4-3Q9BYR4 195 aa3.16□□□□□ -1.9
PDLIM3-209ENST00000514142 MT1MQ8N339 61 aa3.15□□□□□ -1.9
PDLIM3-209ENST00000514142 KRTAP9-6A0A140TA67 174 aa3.11□□□□□ -1.91
PDLIM3-209ENST00000514142 KRTAP9-2Q9BYQ4 174 aa3.11□□□□□ -1.91
PDLIM3-209ENST00000514142 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
PDLIM3-209ENST00000514142 MT3P25713 68 aa3.1□□□□□ -1.91
PDLIM3-209ENST00000514142 KRTAP19-6Q3LI70 58 aa3.07□□□□□ -1.92
PDLIM3-209ENST00000514142 KRTAP4-9Q9BYQ8 210 aa3.07□□□□□ -1.92
PDLIM3-209ENST00000514142 KRTAP2-3P0C7H8 128 aa3.05□□□□□ -1.92
PDLIM3-209ENST00000514142 KRTAP2-4Q9BYR9 128 aa3.05□□□□□ -1.92
PDLIM3-209ENST00000514142 KRTAP2-1Q9BYU5 128 aa3.05□□□□□ -1.92
PDLIM3-209ENST00000514142 MT4P47944 62 aa3.05□□□□□ -1.92
PDLIM3-209ENST00000514142 KRTAP19-7Q3SYF9 63 aa3.03□□□□□ -1.93
PDLIM3-209ENST00000514142 LCE1BQ5T7P3 118 aa3.01□□□□□ -1.93
PDLIM3-209ENST00000514142 SYNE2Q8WXH0 6885 aaKnown RBP2.99□□□□□ -1.93
PDLIM3-209ENST00000514142 LCE1DQ5T752 114 aa2.98□□□□□ -1.93
PDLIM3-209ENST00000514142 MT1AP04731 61 aa2.94□□□□□ -1.94
PDLIM3-209ENST00000514142 KRTAP9-6A8MVA2 160 aa2.94□□□□□ -1.94
PDLIM3-209ENST00000514142 USH2AO75445 5202 aa2.91□□□□□ -1.94
PDLIM3-209ENST00000514142 MACF1Q9UPN3 7388 aaKnown RBP2.9□□□□□ -1.95
PDLIM3-209ENST00000514142 DSTQ03001 7570 aaKnown RBP2.9□□□□□ -1.95
PDLIM3-209ENST00000514142 FCGBPQ9Y6R7 5405 aaPredicted RBP2.85□□□□□ -1.95
PDLIM3-209ENST00000514142 KRTAP6-2Q3LI66 62 aa2.85□□□□□ -1.95
PDLIM3-209ENST00000514142 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.95
PDLIM3-209ENST00000514142 KRTAP9-7A8MTY7 169 aa2.83□□□□□ -1.96
PDLIM3-209ENST00000514142 KMT2DO14686 5537 aa2.81□□□□□ -1.96
PDLIM3-209ENST00000514142 KRTAP6-1Q3LI64 71 aa2.81□□□□□ -1.96
PDLIM3-209ENST00000514142 KRTAP4-12Q9BQ66 201 aa2.77□□□□□ -1.97
PDLIM3-209ENST00000514142 KRTAP20-1Q3LI63 56 aa2.77□□□□□ -1.97
PDLIM3-209ENST00000514142 LCE1AQ5T7P2 110 aa2.75□□□□□ -1.97
PDLIM3-209ENST00000514142 LCE5AQ5TCM9 118 aa2.74□□□□□ -1.97
PDLIM3-209ENST00000514142 KRTAP6-3Q3LI67 103 aa2.73□□□□□ -1.97
PDLIM3-209ENST00000514142 KRTAP9-4Q9BYQ2 154 aa2.69□□□□□ -1.98
PDLIM3-209ENST00000514142 KRTAP9-9Q9BYP9 154 aa2.68□□□□□ -1.98
PDLIM3-209ENST00000514142 MUC12Q9UKN1 5478 aa2.65□□□□□ -1.99
PDLIM3-209ENST00000514142 MUC19Q7Z5P9 8384 aa2.62□□□□□ -1.99
PDLIM3-209ENST00000514142 SSPOA2VEC9 5147 aa2.61□□□□□ -1.99
PDLIM3-209ENST00000514142 KRTAP2-2Q9BYT5 123 aa2.61□□□□□ -1.99
PDLIM3-209ENST00000514142 LCE4AQ5TA78 99 aa2.59□□□□□ -1.99
PDLIM3-209ENST00000514142 MDN1Q9NU22 5596 aa2.58□□□□□ -2
PDLIM3-209ENST00000514142 GPR98Q8WXG9 6306 aa2.56□□□□□ -2
PDLIM3-209ENST00000514142 KRTAP4-2Q9BYR5 136 aa2.54□□□□□ -2
PDLIM3-209ENST00000514142 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
PDLIM3-209ENST00000514142 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
PDLIM3-209ENST00000514142 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
PDLIM3-209ENST00000514142 NEBP20929 6669 aa2.45□□□□□ -2.02
PDLIM3-209ENST00000514142 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
PDLIM3-209ENST00000514142 KRTAP5-9P26371 169 aa2.34□□□□□ -2.04
PDLIM3-209ENST00000514142 KRTAP5-3Q6L8H2 238 aa2.29□□□□□ -2.04
PDLIM3-209ENST00000514142 KRTAP5-5Q701N2 237 aaPredicted RBP2.21□□□□□ -2.05
PDLIM3-209ENST00000514142 KRTAP20-2Q3LI61 65 aa2.2□□□□□ -2.06
PDLIM3-209ENST00000514142 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
PDLIM3-209ENST00000514142 MUC5ACP98088 5654 aa2.06□□□□□ -2.08
PDLIM3-209ENST00000514142 HMCN1Q96RW7 5635 aa2.05□□□□□ -2.08
PDLIM3-209ENST00000514142 KRTAP5-4Q6L8H1 288 aa1.98□□□□□ -2.09
PDLIM3-209ENST00000514142 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
PDLIM3-209ENST00000514142 AHNAK2Q8IVF2 5795 aa1.96□□□□□ -2.1
PDLIM3-209ENST00000514142 KRTAP5-10Q6L8G5 202 aa1.71□□□□□ -2.14
PDLIM3-209ENST00000514142 KRTAP5-8O75690 187 aa1.68□□□□□ -2.14
PDLIM3-209ENST00000514142 KRTAP5-2Q701N4 177 aa1.67□□□□□ -2.14
PDLIM3-209ENST00000514142 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
PDLIM3-209ENST00000514142 AHNAKQ09666 5890 aaKnown RBP1.64□□□□□ -2.15
PDLIM3-209ENST00000514142 MUC5BQ9HC84 5762 aaPredicted RBP1.58□□□□□ -2.16
PDLIM3-209ENST00000514142 KRTAP5-7Q6L8G8 165 aa1.53□□□□□ -2.16
PDLIM3-209ENST00000514142 PHGR1C9JFL3 82 aa1.53□□□□□ -2.17
PDLIM3-209ENST00000514142 KRTAP5-1Q6L8H4 278 aa1.5□□□□□ -2.17
PDLIM3-209ENST00000514142 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
PDLIM3-209ENST00000514142 KRTAP21-1Q3LI58 79 aa1.39□□□□□ -2.19
PDLIM3-209ENST00000514142 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 61.2 ms