RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 DCAF8L2P0C7V8 631 aa17.32■□□□□ 0.36
PDLIM3-209ENST00000514142 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
PDLIM3-209ENST00000514142 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
PDLIM3-209ENST00000514142 EHMT2Q96KQ7 1210 aa16.51■□□□□ 0.23
PDLIM3-209ENST00000514142 SHROOM4Q9ULL8 1493 aa16.41■□□□□ 0.22
PDLIM3-209ENST00000514142 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
PDLIM3-209ENST00000514142 PCGF6Q9BYE7 350 aa16.32■□□□□ 0.2
PDLIM3-209ENST00000514142 CENPBP07199 599 aaPredicted RBP16.13■□□□□ 0.17
PDLIM3-209ENST00000514142 ERICH6Q7L0X2 663 aa16.06■□□□□ 0.16
PDLIM3-209ENST00000514142 MYT1Q01538 1121 aa16.04■□□□□ 0.16
PDLIM3-209ENST00000514142 TTBK1Q5TCY1 1321 aaPredicted RBP16.02■□□□□ 0.16
PDLIM3-209ENST00000514142 FAM9AQ8IZU1 332 aaPredicted RBP16■□□□□ 0.15
PDLIM3-209ENST00000514142 APLP2Q06481 763 aa15.99■□□□□ 0.15
PDLIM3-209ENST00000514142 ZEB1P37275 1124 aaPredicted RBP15.93■□□□□ 0.14
PDLIM3-209ENST00000514142 CCER1Q8TC90 406 aaPredicted RBP15.87■□□□□ 0.13
PDLIM3-209ENST00000514142 YTHDC1Q96MU7 727 aaKnown RBP15.82■□□□□ 0.12
PDLIM3-209ENST00000514142 NEFLP07196 543 aa15.65■□□□□ 0.1
PDLIM3-209ENST00000514142 HRCP23327 699 aa15.6■□□□□ 0.09
PDLIM3-209ENST00000514142 RANGAP1P46060 587 aaPredicted RBP15.58■□□□□ 0.09
PDLIM3-209ENST00000514142 TRIM41Q8WV44 630 aa15.53■□□□□ 0.08
PDLIM3-209ENST00000514142 PPARGC1BQ86YN6 1023 aaKnown RBP15.47■□□□□ 0.07
PDLIM3-209ENST00000514142 TRIM26Q12899 539 aaPredicted RBP15.42■□□□□ 0.06
PDLIM3-209ENST00000514142 UBTFP17480 764 aaKnown RBP15.35■□□□□ 0.05
PDLIM3-209ENST00000514142 ATP1B4Q9UN42 357 aaPredicted RBP15.34■□□□□ 0.05
PDLIM3-209ENST00000514142 DAXXQ9UER7 740 aaPredicted RBP15.2■□□□□ 0.02
PDLIM3-209ENST00000514142 LOC105371045A0A1W2PR82 267 aa15.16■□□□□ 0.02
PDLIM3-209ENST00000514142 DIEXFQ68CQ4 756 aaKnown RBP15.1■□□□□ 0.01
PDLIM3-209ENST00000514142 GTF3C3Q9Y5Q9 886 aa15.06■□□□□ 0
PDLIM3-209ENST00000514142 RTL5Q5HYW3 569 aaPredicted RBP15.05■□□□□ -0
PDLIM3-209ENST00000514142 ITGAEP38570 1179 aa15.04■□□□□ -0
PDLIM3-209ENST00000514142 HNRNPUL2Q1KMD3 747 aaKnown RBP15.03■□□□□ -0
PDLIM3-209ENST00000514142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.03■□□□□ -0
PDLIM3-209ENST00000514142 CHIC1Q5VXU3 224 aa15.01□□□□□ -0.01
PDLIM3-209ENST00000514142 POLR3GLQ9BT43 218 aa15.01□□□□□ -0.01
PDLIM3-209ENST00000514142 CNGB1Q14028 1251 aaPredicted RBP14.99□□□□□ -0.01
PDLIM3-209ENST00000514142 BCANQ96GW7 911 aa14.93□□□□□ -0.02
PDLIM3-209ENST00000514142 ZNF316A6NFI3 1004 aaPredicted RBP14.87□□□□□ -0.03
PDLIM3-209ENST00000514142 CLSPNQ9HAW4 1339 aa14.78□□□□□ -0.04
PDLIM3-209ENST00000514142 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
PDLIM3-209ENST00000514142 CDK11AQ9UQ88 783 aaPredicted RBP14.72□□□□□ -0.05
PDLIM3-209ENST00000514142 NEUROD1Q13562 356 aa14.59□□□□□ -0.07
PDLIM3-209ENST00000514142 ANP32CO43423 234 aa14.57□□□□□ -0.08
PDLIM3-209ENST00000514142 EIF5BO60841 1220 aaKnown RBP14.56□□□□□ -0.08
PDLIM3-209ENST00000514142 SLC4A1APQ9BWU0 796 aaKnown RBP14.54□□□□□ -0.08
PDLIM3-209ENST00000514142 MYT1LQ9UL68 1186 aa14.54□□□□□ -0.08
PDLIM3-209ENST00000514142 FAM50AQ14320 339 aaKnown RBP14.52□□□□□ -0.09
PDLIM3-209ENST00000514142 ANP32AP39687 249 aaKnown RBP14.47□□□□□ -0.09
PDLIM3-209ENST00000514142 SCAF1Q9H7N4 1312 aaKnown RBP14.44□□□□□ -0.1
PDLIM3-209ENST00000514142 NPM2Q86SE8 214 aaKnown RBP14.44□□□□□ -0.1
PDLIM3-209ENST00000514142 TRIM52Q96A61 297 aa14.44□□□□□ -0.1
PDLIM3-209ENST00000514142 FKBP8Q14318 412 aa14.43□□□□□ -0.1
PDLIM3-209ENST00000514142 ZNF326Q5BKZ1 582 aaKnown RBP14.37□□□□□ -0.11
PDLIM3-209ENST00000514142 BCL11AQ9H165 835 aa14.33□□□□□ -0.12
PDLIM3-209ENST00000514142 NBR1Q14596 966 aa14.31□□□□□ -0.12
PDLIM3-209ENST00000514142 CANXP27824 592 aaKnown RBP14.29□□□□□ -0.12
PDLIM3-209ENST00000514142 ZBTB47Q9UFB7 747 aaPredicted RBP14.28□□□□□ -0.12
PDLIM3-209ENST00000514142 GLIPR1L2Q4G1C9 344 aa14.26□□□□□ -0.13
PDLIM3-209ENST00000514142 HNRNPUQ00839 825 aaKnown RBP eCLIP14.22□□□□□ -0.13
PDLIM3-209ENST00000514142 DDX10Q13206 875 aaKnown RBP14.17□□□□□ -0.14
PDLIM3-209ENST00000514142 ANP32BQ92688 251 aaKnown RBP14.17□□□□□ -0.14
PDLIM3-209ENST00000514142 ARXQ96QS3 562 aa14.14□□□□□ -0.15
PDLIM3-209ENST00000514142 MIER1Q8N108 512 aa14.14□□□□□ -0.15
PDLIM3-209ENST00000514142 FAM9BQ8IZU0 186 aa14.13□□□□□ -0.15
PDLIM3-209ENST00000514142 CCDC136Q96JN2 1154 aa14.11□□□□□ -0.15
PDLIM3-209ENST00000514142 PABPN1Q86U42 306 aaKnown RBP eCLIP14.11□□□□□ -0.15
PDLIM3-209ENST00000514142 ANP32EQ9BTT0 268 aa14.11□□□□□ -0.15
PDLIM3-209ENST00000514142 HSP90AA1P07900 732 aaKnown RBP14.1□□□□□ -0.15
PDLIM3-209ENST00000514142 IRX6P78412 446 aaPredicted RBP14.1□□□□□ -0.15
PDLIM3-209ENST00000514142 SALL2Q9Y467 1007 aaPredicted RBP14.07□□□□□ -0.16
PDLIM3-209ENST00000514142 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
PDLIM3-209ENST00000514142 UPF2Q9HAU5 1272 aaKnown RBP14.05□□□□□ -0.16
PDLIM3-209ENST00000514142 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
PDLIM3-209ENST00000514142 CSRNP3Q8WYN3 585 aa14.02□□□□□ -0.16
PDLIM3-209ENST00000514142 ABCC9O60706 1549 aa14.02□□□□□ -0.17
PDLIM3-209ENST00000514142 P3H3Q8IVL6 736 aa14.01□□□□□ -0.17
PDLIM3-209ENST00000514142 TONSLQ96HA7 1378 aa14□□□□□ -0.17
PDLIM3-209ENST00000514142 NEFMP07197 916 aa13.99□□□□□ -0.17
PDLIM3-209ENST00000514142 ARID3CA6NKF2 412 aa13.95□□□□□ -0.18
PDLIM3-209ENST00000514142 RTN4Q9NQC3 1192 aaKnown RBP13.94□□□□□ -0.18
PDLIM3-209ENST00000514142 MRS2Q9HD23 443 aa13.93□□□□□ -0.18
PDLIM3-209ENST00000514142 HIRIP3Q9BW71 556 aaPredicted RBP13.92□□□□□ -0.18
PDLIM3-209ENST00000514142 TMC1Q8TDI8 760 aa13.92□□□□□ -0.18
PDLIM3-209ENST00000514142 FBLN2P98095 1184 aa13.9□□□□□ -0.18
PDLIM3-209ENST00000514142 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.89□□□□□ -0.19
PDLIM3-209ENST00000514142 ZNF777Q9ULD5 760 aaPredicted RBP13.86□□□□□ -0.19
PDLIM3-209ENST00000514142 TRIM44Q96DX7 344 aaPredicted RBP13.83□□□□□ -0.2
PDLIM3-209ENST00000514142 DDRGK1Q96HY6 314 aa13.82□□□□□ -0.2
PDLIM3-209ENST00000514142 SUPT16HQ9Y5B9 1047 aaKnown RBP13.81□□□□□ -0.2
PDLIM3-209ENST00000514142 LAS1LQ9Y4W2 734 aaKnown RBP13.79□□□□□ -0.2
PDLIM3-209ENST00000514142 SENP3-EIF4A1A0A087X0R7 540 aa13.78□□□□□ -0.2
PDLIM3-209ENST00000514142 ERICH6BQ5W0A0 696 aa13.78□□□□□ -0.2
PDLIM3-209ENST00000514142 BECN1Q14457 450 aa13.77□□□□□ -0.21
PDLIM3-209ENST00000514142 WDR43Q15061 677 aaKnown RBP eCLIP13.76□□□□□ -0.21
PDLIM3-209ENST00000514142 NAP1L5Q96NT1 182 aaPredicted RBP13.76□□□□□ -0.21
PDLIM3-209ENST00000514142 PPM1GO15355 546 aaPredicted RBP13.75□□□□□ -0.21
PDLIM3-209ENST00000514142 CHIC2Q9UKJ5 165 aa13.75□□□□□ -0.21
PDLIM3-209ENST00000514142 NOP58Q9Y2X3 529 aaKnown RBP13.75□□□□□ -0.21
PDLIM3-209ENST00000514142 TNNT2P45379 298 aaPredicted RBP13.72□□□□□ -0.21
PDLIM3-209ENST00000514142 DEKP35659 375 aaKnown RBP13.72□□□□□ -0.21
PDLIM3-209ENST00000514142 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms