RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 MT1EP04732 61 aa2.3□□□□□ -2.04
UBE2D3-224ENST00000508474 PRM1P04553 51 aa2.3□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP19-2Q3LHN2 52 aa2.3□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP19-3Q7Z4W3 81 aa2.28□□□□□ -2.04
UBE2D3-224ENST00000508474 KRTAP4-7Q9BYR0 210 aa2.28□□□□□ -2.04
UBE2D3-224ENST00000508474 PCLOQ9Y6V0 5065 aa2.23□□□□□ -2.05
UBE2D3-224ENST00000508474 MT3P25713 68 aa2.22□□□□□ -2.05
UBE2D3-224ENST00000508474 MUC17Q685J3 4493 aa2.21□□□□□ -2.06
UBE2D3-224ENST00000508474 MT1MQ8N339 61 aa2.2□□□□□ -2.06
UBE2D3-224ENST00000508474 HMCN2Q8NDA2 5059 aa2.19□□□□□ -2.06
UBE2D3-224ENST00000508474 MUC2Q02817 5179 aa2.19□□□□□ -2.06
UBE2D3-224ENST00000508474 RNF213Q63HN8 5207 aa2.16□□□□□ -2.06
UBE2D3-224ENST00000508474 LCE1AQ5T7P2 110 aa2.14□□□□□ -2.07
UBE2D3-224ENST00000508474 MT1AP04731 61 aa2.14□□□□□ -2.07
UBE2D3-224ENST00000508474 KRTAP19-7Q3SYF9 63 aa2.14□□□□□ -2.07
UBE2D3-224ENST00000508474 UBR4Q5T4S7 5183 aa2.13□□□□□ -2.07
UBE2D3-224ENST00000508474 KRTAP19-6Q3LI70 58 aa2.12□□□□□ -2.07
UBE2D3-224ENST00000508474 FAT4Q6V0I7 4981 aa2.11□□□□□ -2.07
UBE2D3-224ENST00000508474 KRTAP20-1Q3LI63 56 aa2.1□□□□□ -2.07
UBE2D3-224ENST00000508474 KRTAP9-6A0A140TA67 174 aa2.08□□□□□ -2.08
UBE2D3-224ENST00000508474 LCE5AQ5TCM9 118 aa2.08□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP4-3Q9BYR4 195 aa2.07□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP9-6A8MVA2 160 aa2.07□□□□□ -2.08
UBE2D3-224ENST00000508474 LCE4AQ5TA78 99 aa2.06□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP2-2Q9BYT5 123 aa2.06□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.06□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP6-3Q3LI67 103 aa2.05□□□□□ -2.08
UBE2D3-224ENST00000508474 KRTAP4-9Q9BYQ8 210 aa2.02□□□□□ -2.09
UBE2D3-224ENST00000508474 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
UBE2D3-224ENST00000508474 KRTAP9-2Q9BYQ4 174 aa2.02□□□□□ -2.09
UBE2D3-224ENST00000508474 KRTAP6-2Q3LI66 62 aa2.01□□□□□ -2.09
UBE2D3-224ENST00000508474 SYNE1Q8NF91 8797 aaKnown RBP1.99□□□□□ -2.09
UBE2D3-224ENST00000508474 KRTAP9-7A8MTY7 169 aa1.94□□□□□ -2.1
UBE2D3-224ENST00000508474 LCE1BQ5T7P3 118 aa1.94□□□□□ -2.1
UBE2D3-224ENST00000508474 KRTAP6-1Q3LI64 71 aa1.93□□□□□ -2.1
UBE2D3-224ENST00000508474 LCE1DQ5T752 114 aa1.93□□□□□ -2.1
UBE2D3-224ENST00000508474 LCE1FQ5T754 118 aa1.92□□□□□ -2.1
UBE2D3-224ENST00000508474 MT4P47944 62 aa1.91□□□□□ -2.1
UBE2D3-224ENST00000508474 KRTAP4-2Q9BYR5 136 aa1.88□□□□□ -2.11
UBE2D3-224ENST00000508474 FSIP2Q5CZC0 6907 aa1.87□□□□□ -2.11
UBE2D3-224ENST00000508474 GPR98Q8WXG9 6306 aa1.86□□□□□ -2.11
UBE2D3-224ENST00000508474 USH2AO75445 5202 aa1.85□□□□□ -2.11
UBE2D3-224ENST00000508474 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
UBE2D3-224ENST00000508474 KMT2DO14686 5537 aa1.78□□□□□ -2.12
UBE2D3-224ENST00000508474 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
UBE2D3-224ENST00000508474 LCE1EQ5T753 118 aa1.74□□□□□ -2.13
UBE2D3-224ENST00000508474 SSPOA2VEC9 5147 aa1.74□□□□□ -2.13
UBE2D3-224ENST00000508474 KRTAP5-3Q6L8H2 238 aa1.71□□□□□ -2.13
UBE2D3-224ENST00000508474 FCGBPQ9Y6R7 5405 aaPredicted RBP1.69□□□□□ -2.14
UBE2D3-224ENST00000508474 SYNE2Q8WXH0 6885 aaKnown RBP1.66□□□□□ -2.14
UBE2D3-224ENST00000508474 KRTAP4-11Q9BYQ6 195 aa1.65□□□□□ -2.15
UBE2D3-224ENST00000508474 MUC12Q9UKN1 5478 aa1.64□□□□□ -2.15
UBE2D3-224ENST00000508474 KRTAP5-5Q701N2 237 aaPredicted RBP1.64□□□□□ -2.15
UBE2D3-224ENST00000508474 MACF1Q9UPN3 7388 aaKnown RBP1.61□□□□□ -2.15
UBE2D3-224ENST00000508474 DSTQ03001 7570 aaKnown RBP1.61□□□□□ -2.15
UBE2D3-224ENST00000508474 NEBP20929 6669 aa1.61□□□□□ -2.15
UBE2D3-224ENST00000508474 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.6□□□□□ -2.15
UBE2D3-224ENST00000508474 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
UBE2D3-224ENST00000508474 MDN1Q9NU22 5596 aa1.48□□□□□ -2.17
UBE2D3-224ENST00000508474 KRTAP5-4Q6L8H1 288 aa1.47□□□□□ -2.17
UBE2D3-224ENST00000508474 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
UBE2D3-224ENST00000508474 KRTAP20-2Q3LI61 65 aa1.45□□□□□ -2.18
UBE2D3-224ENST00000508474 HMCN1Q96RW7 5635 aa1.44□□□□□ -2.18
UBE2D3-224ENST00000508474 MUC19Q7Z5P9 8384 aa1.4□□□□□ -2.19
UBE2D3-224ENST00000508474 KRTAP5-2Q701N4 177 aa1.39□□□□□ -2.19
UBE2D3-224ENST00000508474 KRTAP4-4Q9BYR3 166 aa1.34□□□□□ -2.19
UBE2D3-224ENST00000508474 KRTAP5-1Q6L8H4 278 aa1.29□□□□□ -2.2
UBE2D3-224ENST00000508474 MUC5ACP98088 5654 aa1.29□□□□□ -2.2
UBE2D3-224ENST00000508474 MUC5BQ9HC84 5762 aaPredicted RBP1.27□□□□□ -2.21
UBE2D3-224ENST00000508474 KRTAP5-11Q6L8G4 156 aa1.26□□□□□ -2.21
UBE2D3-224ENST00000508474 KRTAP5-10Q6L8G5 202 aa1.26□□□□□ -2.21
UBE2D3-224ENST00000508474 AHNAKQ09666 5890 aaKnown RBP1.18□□□□□ -2.22
UBE2D3-224ENST00000508474 KRTAP21-1Q3LI58 79 aa1.12□□□□□ -2.23
UBE2D3-224ENST00000508474 PHGR1C9JFL3 82 aa1.09□□□□□ -2.24
UBE2D3-224ENST00000508474 KRTAP5-8O75690 187 aa1.07□□□□□ -2.24
UBE2D3-224ENST00000508474 KRTAP21-2Q3LI59 83 aa1.01□□□□□ -2.25
UBE2D3-224ENST00000508474 KRTAP5-7Q6L8G8 165 aa0.94□□□□□ -2.26
UBE2D3-224ENST00000508474 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms