RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 KRTAP2-4Q9BYR9 128 aa1.63□□□□□ -2.15
USF3-204ENST00000496826 KRTAP19-1Q8IUB9 90 aa1.62□□□□□ -2.15
USF3-204ENST00000496826 ANK2Q01484 3957 aa1.59□□□□□ -2.16
USF3-204ENST00000496826 LRP1BQ9NZR2 4599 aa1.58□□□□□ -2.16
USF3-204ENST00000496826 DYNC2H1Q8NCM8 4307 aaKnown RBP1.58□□□□□ -2.16
USF3-204ENST00000496826 VPS13BQ7Z7G8 4022 aa1.57□□□□□ -2.16
USF3-204ENST00000496826 USH2AO75445 5202 aa1.55□□□□□ -2.16
USF3-204ENST00000496826 VPS13DQ5THJ4 4388 aa1.55□□□□□ -2.16
USF3-204ENST00000496826 LRP2P98164 4655 aa1.54□□□□□ -2.16
USF3-204ENST00000496826 KRTAP19-6Q3LI70 58 aa1.53□□□□□ -2.16
USF3-204ENST00000496826 KRTAP2-1Q9BYU5 128 aa1.53□□□□□ -2.16
USF3-204ENST00000496826 KRTAP19-7Q3SYF9 63 aa1.53□□□□□ -2.16
USF3-204ENST00000496826 KRTAP2-2Q9BYT5 123 aa1.52□□□□□ -2.17
USF3-204ENST00000496826 FAT1Q14517 4588 aa1.5□□□□□ -2.17
USF3-204ENST00000496826 KRTAP4-1Q9BYQ7 146 aa1.49□□□□□ -2.17
USF3-204ENST00000496826 PRKDCP78527 4128 aaKnown RBP1.49□□□□□ -2.17
USF3-204ENST00000496826 PKHD1L1Q86WI1 4243 aa1.48□□□□□ -2.17
USF3-204ENST00000496826 FSIP2Q5CZC0 6907 aa1.48□□□□□ -2.17
USF3-204ENST00000496826 SSPOA2VEC9 5147 aa1.48□□□□□ -2.17
USF3-204ENST00000496826 KRTAP6-2Q3LI66 62 aa1.47□□□□□ -2.17
USF3-204ENST00000496826 KRTAP6-3Q3LI67 103 aa1.46□□□□□ -2.18
USF3-204ENST00000496826 KRTAP9-4Q9BYQ2 154 aa1.46□□□□□ -2.18
USF3-204ENST00000496826 KRTAP9-3Q9BYQ3 159 aa1.44□□□□□ -2.18
USF3-204ENST00000496826 MUC2Q02817 5179 aa1.41□□□□□ -2.18
USF3-204ENST00000496826 PKD1P98161 4303 aa1.41□□□□□ -2.18
USF3-204ENST00000496826 KRTAP9-8Q9BYQ0 159 aa1.41□□□□□ -2.18
USF3-204ENST00000496826 KRTAP9-2Q9BYQ4 174 aa1.39□□□□□ -2.19
USF3-204ENST00000496826 KRTAP4-8A0A0G2JLE6 195 aa1.39□□□□□ -2.19
USF3-204ENST00000496826 KRTAP4-8Q9BYQ9 185 aa1.39□□□□□ -2.19
USF3-204ENST00000496826 KRTAP19-2Q3LHN2 52 aa1.38□□□□□ -2.19
USF3-204ENST00000496826 KRTAP4-7Q9BYR0 210 aa1.36□□□□□ -2.19
USF3-204ENST00000496826 KRTAP9-6A8MVA2 160 aa1.35□□□□□ -2.19
USF3-204ENST00000496826 LPAP08519 4548 aa1.35□□□□□ -2.19
USF3-204ENST00000496826 SYNE2Q8WXH0 6885 aaKnown RBP1.34□□□□□ -2.19
USF3-204ENST00000496826 KRTAP4-9Q9BYQ8 210 aa1.34□□□□□ -2.19
USF3-204ENST00000496826 KRTAP20-2Q3LI61 65 aa1.33□□□□□ -2.2
USF3-204ENST00000496826 KMT2DO14686 5537 aa1.33□□□□□ -2.2
USF3-204ENST00000496826 LOC100996750A0A140TA64 210 aa1.31□□□□□ -2.2
USF3-204ENST00000496826 SYNE1Q8NF91 8797 aaKnown RBP1.31□□□□□ -2.2
USF3-204ENST00000496826 MUC12Q9UKN1 5478 aa1.31□□□□□ -2.2
USF3-204ENST00000496826 TNXBP22105 4242 aa1.29□□□□□ -2.2
USF3-204ENST00000496826 MUC17Q685J3 4493 aa1.29□□□□□ -2.2
USF3-204ENST00000496826 KRTAP6-1Q3LI64 71 aa1.27□□□□□ -2.21
USF3-204ENST00000496826 MUC5BQ9HC84 5762 aaPredicted RBP1.27□□□□□ -2.21
USF3-204ENST00000496826 KRTAP4-11Q9BYQ6 195 aa1.24□□□□□ -2.21
USF3-204ENST00000496826 OBSCNQ5VST9 7968 aa1.23□□□□□ -2.21
USF3-204ENST00000496826 FCGBPQ9Y6R7 5405 aaPredicted RBP1.22□□□□□ -2.21
USF3-204ENST00000496826 KRTAP4-3Q9BYR4 195 aa1.18□□□□□ -2.22
USF3-204ENST00000496826 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.17□□□□□ -2.22
USF3-204ENST00000496826 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.23
USF3-204ENST00000496826 HMCN1Q96RW7 5635 aa1.14□□□□□ -2.23
USF3-204ENST00000496826 NEBP20929 6669 aa1.14□□□□□ -2.23
USF3-204ENST00000496826 AHNAK2Q8IVF2 5795 aa1.14□□□□□ -2.23
USF3-204ENST00000496826 MACF1Q9UPN3 7388 aaKnown RBP1.13□□□□□ -2.23
USF3-204ENST00000496826 MDN1Q9NU22 5596 aa1.11□□□□□ -2.23
USF3-204ENST00000496826 KRTAP5-5Q701N2 237 aaPredicted RBP1.07□□□□□ -2.24
USF3-204ENST00000496826 KRTAP5-4Q6L8H1 288 aa1.06□□□□□ -2.24
USF3-204ENST00000496826 DSTQ03001 7570 aaKnown RBP1.02□□□□□ -2.25
USF3-204ENST00000496826 KRTAP4-2Q9BYR5 136 aa1.02□□□□□ -2.25
USF3-204ENST00000496826 KRTAP4-6Q9BYQ5 205 aa1.01□□□□□ -2.25
USF3-204ENST00000496826 MUC5ACP98088 5654 aa0.99□□□□□ -2.25
USF3-204ENST00000496826 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
USF3-204ENST00000496826 MUC19Q7Z5P9 8384 aa0.96□□□□□ -2.26
USF3-204ENST00000496826 KRTAP4-4Q9BYR3 166 aa0.96□□□□□ -2.26
USF3-204ENST00000496826 KRTAP4-12Q9BQ66 201 aa0.95□□□□□ -2.26
USF3-204ENST00000496826 KRTAP5-9P26371 169 aa0.93□□□□□ -2.26
USF3-204ENST00000496826 KRTAP5-3Q6L8H2 238 aa0.92□□□□□ -2.26
USF3-204ENST00000496826 KRTAP5-2Q701N4 177 aa0.88□□□□□ -2.27
USF3-204ENST00000496826 AHNAKQ09666 5890 aaKnown RBP0.87□□□□□ -2.27
USF3-204ENST00000496826 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
USF3-204ENST00000496826 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
USF3-204ENST00000496826 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.85□□□□□ -2.27
USF3-204ENST00000496826 KRTAP21-2Q3LI59 83 aa0.79□□□□□ -2.28
USF3-204ENST00000496826 KRTAP5-8O75690 187 aa0.79□□□□□ -2.28
USF3-204ENST00000496826 KRTAP5-10Q6L8G5 202 aa0.78□□□□□ -2.29
USF3-204ENST00000496826 KRTAP5-11Q6L8G4 156 aa0.73□□□□□ -2.29
USF3-204ENST00000496826 KRTAP5-1Q6L8H4 278 aa0.72□□□□□ -2.29
USF3-204ENST00000496826 KRTAP5-7Q6L8G8 165 aa0.7□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 37.1 ms