RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 MT4P47944 62 aa6□□□□□ -1.45
RNF40-203ENST00000493683 MUC17Q685J3 4493 aa5.95□□□□□ -1.46
RNF40-203ENST00000493683 KRTAP9-2Q9BYQ4 174 aa5.92□□□□□ -1.46
RNF40-203ENST00000493683 MT1AP04731 61 aa5.92□□□□□ -1.46
RNF40-203ENST00000493683 LOC100996750A0A140TA64 210 aa5.91□□□□□ -1.46
RNF40-203ENST00000493683 FLGP20930 4061 aaPredicted RBP5.9□□□□□ -1.47
RNF40-203ENST00000493683 LCE1BQ5T7P3 118 aa5.86□□□□□ -1.47
RNF40-203ENST00000493683 KRTAP2-3P0C7H8 128 aa5.84□□□□□ -1.47
RNF40-203ENST00000493683 KRTAP2-4Q9BYR9 128 aa5.84□□□□□ -1.47
RNF40-203ENST00000493683 KRTAP2-1Q9BYU5 128 aa5.84□□□□□ -1.47
RNF40-203ENST00000493683 LCE1DQ5T752 114 aa5.84□□□□□ -1.47
RNF40-203ENST00000493683 KRTAP19-7Q3SYF9 63 aa5.83□□□□□ -1.48
RNF40-203ENST00000493683 KRTAP4-3Q9BYR4 195 aa5.81□□□□□ -1.48
RNF40-203ENST00000493683 ABCA13Q86UQ4 5058 aa5.75□□□□□ -1.49
RNF40-203ENST00000493683 LCE2AQ5TA79 106 aaPredicted RBP5.72□□□□□ -1.49
RNF40-203ENST00000493683 KRTAP9-6A0A140TA67 174 aa5.65□□□□□ -1.51
RNF40-203ENST00000493683 LCE1AQ5T7P2 110 aa5.61□□□□□ -1.51
RNF40-203ENST00000493683 RNF213Q63HN8 5207 aa5.55□□□□□ -1.52
RNF40-203ENST00000493683 KRTAP20-1Q3LI63 56 aa5.53□□□□□ -1.52
RNF40-203ENST00000493683 LCE5AQ5TCM9 118 aa5.52□□□□□ -1.53
RNF40-203ENST00000493683 KRTAP4-9Q9BYQ8 210 aa5.51□□□□□ -1.53
RNF40-203ENST00000493683 MUC2Q02817 5179 aa5.5□□□□□ -1.53
RNF40-203ENST00000493683 UBR4Q5T4S7 5183 aa5.49□□□□□ -1.53
RNF40-203ENST00000493683 KRTAP6-3Q3LI67 103 aa5.45□□□□□ -1.54
RNF40-203ENST00000493683 HMCN2Q8NDA2 5059 aa5.42□□□□□ -1.54
RNF40-203ENST00000493683 FAT4Q6V0I7 4981 aa5.41□□□□□ -1.54
RNF40-203ENST00000493683 KRTAP9-4Q9BYQ2 154 aa5.41□□□□□ -1.54
RNF40-203ENST00000493683 KRTAP6-2Q3LI66 62 aa5.38□□□□□ -1.55
RNF40-203ENST00000493683 OBSCNQ5VST9 7968 aa5.38□□□□□ -1.55
RNF40-203ENST00000493683 KRTAP9-7A8MTY7 169 aa5.37□□□□□ -1.55
RNF40-203ENST00000493683 KRTAP6-1Q3LI64 71 aa5.37□□□□□ -1.55
RNF40-203ENST00000493683 LCE4AQ5TA78 99 aa5.37□□□□□ -1.55
RNF40-203ENST00000493683 KRTAP9-6A8MVA2 160 aa5.3□□□□□ -1.56
RNF40-203ENST00000493683 FSIP2Q5CZC0 6907 aa5.27□□□□□ -1.57
RNF40-203ENST00000493683 SYNE2Q8WXH0 6885 aaKnown RBP5.23□□□□□ -1.57
RNF40-203ENST00000493683 KRTAP2-2Q9BYT5 123 aa5.2□□□□□ -1.58
RNF40-203ENST00000493683 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.13□□□□□ -1.59
RNF40-203ENST00000493683 LCE1CQ5T751 118 aa5.04□□□□□ -1.6
RNF40-203ENST00000493683 LCE1EQ5T753 118 aa5.04□□□□□ -1.6
RNF40-203ENST00000493683 LCE1FQ5T754 118 aa5.04□□□□□ -1.6
RNF40-203ENST00000493683 KMT2DO14686 5537 aa4.87□□□□□ -1.63
RNF40-203ENST00000493683 USH2AO75445 5202 aa4.72□□□□□ -1.65
RNF40-203ENST00000493683 KRTAP9-9Q9BYP9 154 aa4.7□□□□□ -1.66
RNF40-203ENST00000493683 FCGBPQ9Y6R7 5405 aaPredicted RBP4.65□□□□□ -1.66
RNF40-203ENST00000493683 DSTQ03001 7570 aaKnown RBP4.57□□□□□ -1.68
RNF40-203ENST00000493683 MACF1Q9UPN3 7388 aaKnown RBP4.54□□□□□ -1.68
RNF40-203ENST00000493683 KRTAP5-9P26371 169 aa4.52□□□□□ -1.69
RNF40-203ENST00000493683 NEBP20929 6669 aa4.42□□□□□ -1.7
RNF40-203ENST00000493683 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
RNF40-203ENST00000493683 MUC19Q7Z5P9 8384 aa4.41□□□□□ -1.7
RNF40-203ENST00000493683 KRTAP20-2Q3LI61 65 aa4.35□□□□□ -1.71
RNF40-203ENST00000493683 GPR98Q8WXG9 6306 aa4.33□□□□□ -1.72
RNF40-203ENST00000493683 MUC12Q9UKN1 5478 aa4.29□□□□□ -1.72
RNF40-203ENST00000493683 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
RNF40-203ENST00000493683 SSPOA2VEC9 5147 aa4.24□□□□□ -1.73
RNF40-203ENST00000493683 MDN1Q9NU22 5596 aa4.2□□□□□ -1.74
RNF40-203ENST00000493683 KRTAP5-4Q6L8H1 288 aa4.06□□□□□ -1.76
RNF40-203ENST00000493683 KRTAP5-5Q701N2 237 aaPredicted RBP4.01□□□□□ -1.77
RNF40-203ENST00000493683 KRTAP4-4Q9BYR3 166 aa3.93□□□□□ -1.78
RNF40-203ENST00000493683 KRTAP4-12Q9BQ66 201 aa3.89□□□□□ -1.79
RNF40-203ENST00000493683 KRTAP4-2Q9BYR5 136 aa3.89□□□□□ -1.79
RNF40-203ENST00000493683 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
RNF40-203ENST00000493683 AHNAK2Q8IVF2 5795 aa3.51□□□□□ -1.85
RNF40-203ENST00000493683 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
RNF40-203ENST00000493683 HMCN1Q96RW7 5635 aa3.39□□□□□ -1.87
RNF40-203ENST00000493683 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
RNF40-203ENST00000493683 KRTAP5-8O75690 187 aa3.18□□□□□ -1.9
RNF40-203ENST00000493683 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.92
RNF40-203ENST00000493683 PHGR1C9JFL3 82 aa3□□□□□ -1.93
RNF40-203ENST00000493683 MUC5BQ9HC84 5762 aaPredicted RBP2.97□□□□□ -1.93
RNF40-203ENST00000493683 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
RNF40-203ENST00000493683 AHNAKQ09666 5890 aaKnown RBP2.86□□□□□ -1.95
RNF40-203ENST00000493683 KRTAP5-1Q6L8H4 278 aa2.81□□□□□ -1.96
RNF40-203ENST00000493683 KRTAP21-2Q3LI59 83 aa2.68□□□□□ -1.98
RNF40-203ENST00000493683 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
RNF40-203ENST00000493683 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
RNF40-203ENST00000493683 KRTAP5-7Q6L8G8 165 aa2.47□□□□□ -2.01
RNF40-203ENST00000493683 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 9.8 ms