RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 KRTAP4-7Q9BYR0 210 aa2.73□□□□□ -1.97
SYNE1-224ENST00000478916 KRTAP9-6A0A140TA67 174 aa2.72□□□□□ -1.97
SYNE1-224ENST00000478916 EPPK1P58107 5090 aaKnown RBP2.69□□□□□ -1.98
SYNE1-224ENST00000478916 KMT2CQ8NEZ4 4911 aaKnown RBP2.66□□□□□ -1.98
SYNE1-224ENST00000478916 LCE2AQ5TA79 106 aaPredicted RBP2.65□□□□□ -1.98
SYNE1-224ENST00000478916 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
SYNE1-224ENST00000478916 KRTAP20-1Q3LI63 56 aa2.62□□□□□ -1.99
SYNE1-224ENST00000478916 LOC100996750A0A140TA64 210 aa2.6□□□□□ -1.99
SYNE1-224ENST00000478916 LCE1DQ5T752 114 aa2.59□□□□□ -1.99
SYNE1-224ENST00000478916 KRTAP4-3Q9BYR4 195 aa2.57□□□□□ -2
SYNE1-224ENST00000478916 ABCA13Q86UQ4 5058 aa2.57□□□□□ -2
SYNE1-224ENST00000478916 MT1AP04731 61 aa2.56□□□□□ -2
SYNE1-224ENST00000478916 KRTAP9-7A8MTY7 169 aa2.55□□□□□ -2
SYNE1-224ENST00000478916 RNF213Q63HN8 5207 aa2.54□□□□□ -2
SYNE1-224ENST00000478916 KRTAP6-3Q3LI67 103 aa2.54□□□□□ -2
SYNE1-224ENST00000478916 KRTAP19-7Q3SYF9 63 aa2.54□□□□□ -2
SYNE1-224ENST00000478916 LCE1AQ5T7P2 110 aa2.52□□□□□ -2.01
SYNE1-224ENST00000478916 FAT4Q6V0I7 4981 aa2.5□□□□□ -2.01
SYNE1-224ENST00000478916 KRTAP2-3P0C7H8 128 aa2.5□□□□□ -2.01
SYNE1-224ENST00000478916 KRTAP2-4Q9BYR9 128 aa2.5□□□□□ -2.01
SYNE1-224ENST00000478916 KRTAP2-1Q9BYU5 128 aa2.49□□□□□ -2.01
SYNE1-224ENST00000478916 SYNE2Q8WXH0 6885 aaKnown RBP2.47□□□□□ -2.01
SYNE1-224ENST00000478916 LCE5AQ5TCM9 118 aa2.46□□□□□ -2.02
SYNE1-224ENST00000478916 KRTAP4-9Q9BYQ8 210 aa2.45□□□□□ -2.02
SYNE1-224ENST00000478916 UBR4Q5T4S7 5183 aa2.45□□□□□ -2.02
SYNE1-224ENST00000478916 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.44□□□□□ -2.02
SYNE1-224ENST00000478916 LCE4AQ5TA78 99 aa2.44□□□□□ -2.02
SYNE1-224ENST00000478916 KRTAP6-2Q3LI66 62 aa2.41□□□□□ -2.02
SYNE1-224ENST00000478916 HMCN2Q8NDA2 5059 aa2.4□□□□□ -2.02
SYNE1-224ENST00000478916 KRTAP2-2Q9BYT5 123 aa2.4□□□□□ -2.03
SYNE1-224ENST00000478916 FSIP2Q5CZC0 6907 aa2.4□□□□□ -2.03
SYNE1-224ENST00000478916 KRTAP9-4Q9BYQ2 154 aa2.36□□□□□ -2.03
SYNE1-224ENST00000478916 MUC2Q02817 5179 aa2.35□□□□□ -2.03
SYNE1-224ENST00000478916 KRTAP6-1Q3LI64 71 aa2.35□□□□□ -2.03
SYNE1-224ENST00000478916 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
SYNE1-224ENST00000478916 LCE1EQ5T753 118 aa2.28□□□□□ -2.04
SYNE1-224ENST00000478916 LCE1FQ5T754 118 aa2.28□□□□□ -2.04
SYNE1-224ENST00000478916 SYNE1Q8NF91 8797 aaKnown RBP2.27□□□□□ -2.05
SYNE1-224ENST00000478916 KRTAP9-6A8MVA2 160 aa2.22□□□□□ -2.05
SYNE1-224ENST00000478916 KRTAP9-9Q9BYP9 154 aa2.16□□□□□ -2.06
SYNE1-224ENST00000478916 OBSCNQ5VST9 7968 aa2.12□□□□□ -2.07
SYNE1-224ENST00000478916 NEBP20929 6669 aa2.12□□□□□ -2.07
SYNE1-224ENST00000478916 KRTAP5-9P26371 169 aa2.1□□□□□ -2.07
SYNE1-224ENST00000478916 KRTAP4-11Q9BYQ6 195 aa2.05□□□□□ -2.08
SYNE1-224ENST00000478916 USH2AO75445 5202 aa2.05□□□□□ -2.08
SYNE1-224ENST00000478916 SSPOA2VEC9 5147 aa2.01□□□□□ -2.09
SYNE1-224ENST00000478916 KRTAP20-2Q3LI61 65 aa1.99□□□□□ -2.09
SYNE1-224ENST00000478916 MACF1Q9UPN3 7388 aaKnown RBP1.98□□□□□ -2.09
SYNE1-224ENST00000478916 KRTAP4-6Q9BYQ5 205 aa1.97□□□□□ -2.09
SYNE1-224ENST00000478916 FCGBPQ9Y6R7 5405 aaPredicted RBP1.91□□□□□ -2.1
SYNE1-224ENST00000478916 DSTQ03001 7570 aaKnown RBP1.9□□□□□ -2.11
SYNE1-224ENST00000478916 KRTAP5-4Q6L8H1 288 aa1.89□□□□□ -2.11
SYNE1-224ENST00000478916 GPR98Q8WXG9 6306 aa1.88□□□□□ -2.11
SYNE1-224ENST00000478916 KMT2DO14686 5537 aa1.86□□□□□ -2.11
SYNE1-224ENST00000478916 MUC5BQ9HC84 5762 aaPredicted RBP1.8□□□□□ -2.12
SYNE1-224ENST00000478916 MDN1Q9NU22 5596 aa1.8□□□□□ -2.12
SYNE1-224ENST00000478916 KRTAP4-12Q9BQ66 201 aa1.79□□□□□ -2.12
SYNE1-224ENST00000478916 KRTAP4-2Q9BYR5 136 aa1.79□□□□□ -2.12
SYNE1-224ENST00000478916 KRTAP4-4Q9BYR3 166 aa1.77□□□□□ -2.13
SYNE1-224ENST00000478916 MUC12Q9UKN1 5478 aa1.73□□□□□ -2.13
SYNE1-224ENST00000478916 KRTAP5-5Q701N2 237 aaPredicted RBP1.71□□□□□ -2.14
SYNE1-224ENST00000478916 HMCN1Q96RW7 5635 aa1.7□□□□□ -2.14
SYNE1-224ENST00000478916 MUC19Q7Z5P9 8384 aa1.66□□□□□ -2.14
SYNE1-224ENST00000478916 KRTAP5-3Q6L8H2 238 aa1.65□□□□□ -2.15
SYNE1-224ENST00000478916 AHNAKQ09666 5890 aaKnown RBP1.61□□□□□ -2.15
SYNE1-224ENST00000478916 AHNAK2Q8IVF2 5795 aa1.57□□□□□ -2.16
SYNE1-224ENST00000478916 MUC5ACP98088 5654 aa1.53□□□□□ -2.16
SYNE1-224ENST00000478916 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
SYNE1-224ENST00000478916 PHGR1C9JFL3 82 aa1.44□□□□□ -2.18
SYNE1-224ENST00000478916 KRTAP5-2Q701N4 177 aa1.4□□□□□ -2.18
SYNE1-224ENST00000478916 KRTAP5-10Q6L8G5 202 aa1.36□□□□□ -2.19
SYNE1-224ENST00000478916 KRTAP5-11Q6L8G4 156 aa1.3□□□□□ -2.2
SYNE1-224ENST00000478916 KRTAP5-7Q6L8G8 165 aa1.25□□□□□ -2.21
SYNE1-224ENST00000478916 KRTAP5-1Q6L8H4 278 aa1.22□□□□□ -2.21
SYNE1-224ENST00000478916 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
SYNE1-224ENST00000478916 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
SYNE1-224ENST00000478916 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.12□□□□□ -2.23
SYNE1-224ENST00000478916 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 62.2 ms