RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 DCAF8L2P0C7V8 631 aa15.23■□□□□ 0.03
SYNE1-224ENST00000478916 NISCHQ9Y2I1 1504 aa14.49□□□□□ -0.09
SYNE1-224ENST00000478916 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
SYNE1-224ENST00000478916 SUPT5HO00267 1087 aaKnown RBP14.22□□□□□ -0.13
SYNE1-224ENST00000478916 SHROOM4Q9ULL8 1493 aa14.01□□□□□ -0.17
SYNE1-224ENST00000478916 MYT1Q01538 1121 aa13.89□□□□□ -0.19
SYNE1-224ENST00000478916 ERICH6Q7L0X2 663 aa13.87□□□□□ -0.19
SYNE1-224ENST00000478916 FAM9AQ8IZU1 332 aaPredicted RBP13.79□□□□□ -0.2
SYNE1-224ENST00000478916 CCER1Q8TC90 406 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-224ENST00000478916 APLP2Q06481 763 aa13.75□□□□□ -0.21
SYNE1-224ENST00000478916 EHMT2Q96KQ7 1210 aa13.74□□□□□ -0.21
SYNE1-224ENST00000478916 CENPBP07199 599 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-224ENST00000478916 ZEB1P37275 1124 aaPredicted RBP13.36□□□□□ -0.27
SYNE1-224ENST00000478916 NEFLP07196 543 aa13.33□□□□□ -0.28
SYNE1-224ENST00000478916 PCGF6Q9BYE7 350 aa13.3□□□□□ -0.28
SYNE1-224ENST00000478916 RANGAP1P46060 587 aaPredicted RBP13.27□□□□□ -0.28
SYNE1-224ENST00000478916 TTBK1Q5TCY1 1321 aaPredicted RBP13.27□□□□□ -0.28
SYNE1-224ENST00000478916 ATP1B4Q9UN42 357 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-224ENST00000478916 TRIM41Q8WV44 630 aa13.26□□□□□ -0.29
SYNE1-224ENST00000478916 YTHDC1Q96MU7 727 aaKnown RBP13.18□□□□□ -0.3
SYNE1-224ENST00000478916 UBTFP17480 764 aaKnown RBP13.15□□□□□ -0.3
SYNE1-224ENST00000478916 DAXXQ9UER7 740 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-224ENST00000478916 MYT1LQ9UL68 1186 aa12.91□□□□□ -0.34
SYNE1-224ENST00000478916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-224ENST00000478916 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
SYNE1-224ENST00000478916 RTL5Q5HYW3 569 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-224ENST00000478916 ZNF316A6NFI3 1004 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-224ENST00000478916 ABCC9O60706 1549 aa12.69□□□□□ -0.38
SYNE1-224ENST00000478916 HRCP23327 699 aa12.67□□□□□ -0.38
SYNE1-224ENST00000478916 ITGAEP38570 1179 aa12.66□□□□□ -0.38
SYNE1-224ENST00000478916 PPARGC1BQ86YN6 1023 aaKnown RBP12.66□□□□□ -0.38
SYNE1-224ENST00000478916 TRIM26Q12899 539 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-224ENST00000478916 POLR3GLQ9BT43 218 aa12.6□□□□□ -0.39
SYNE1-224ENST00000478916 PABPN1Q86U42 306 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNE1-224ENST00000478916 CLSPNQ9HAW4 1339 aa12.59□□□□□ -0.39
SYNE1-224ENST00000478916 CHIC1Q5VXU3 224 aa12.57□□□□□ -0.4
SYNE1-224ENST00000478916 SLC4A1APQ9BWU0 796 aaKnown RBP12.49□□□□□ -0.41
SYNE1-224ENST00000478916 DIEXFQ68CQ4 756 aaKnown RBP12.44□□□□□ -0.42
SYNE1-224ENST00000478916 CDK11AQ9UQ88 783 aaPredicted RBP12.42□□□□□ -0.42
SYNE1-224ENST00000478916 FAM50AQ14320 339 aaKnown RBP12.42□□□□□ -0.42
SYNE1-224ENST00000478916 FBLN2P98095 1184 aa12.42□□□□□ -0.42
SYNE1-224ENST00000478916 CNGB1Q14028 1251 aaPredicted RBP12.41□□□□□ -0.42
SYNE1-224ENST00000478916 LOC105371045A0A1W2PR82 267 aa12.4□□□□□ -0.42
SYNE1-224ENST00000478916 GLIPR1L2Q4G1C9 344 aa12.4□□□□□ -0.42
SYNE1-224ENST00000478916 TRIM52Q96A61 297 aa12.38□□□□□ -0.43
SYNE1-224ENST00000478916 EIF5BO60841 1220 aaKnown RBP12.36□□□□□ -0.43
SYNE1-224ENST00000478916 GTF3C3Q9Y5Q9 886 aa12.35□□□□□ -0.43
SYNE1-224ENST00000478916 BCANQ96GW7 911 aa12.32□□□□□ -0.44
SYNE1-224ENST00000478916 ZBTB47Q9UFB7 747 aaPredicted RBP12.29□□□□□ -0.44
SYNE1-224ENST00000478916 ANP32AP39687 249 aaKnown RBP12.26□□□□□ -0.45
SYNE1-224ENST00000478916 ANP32BQ92688 251 aaKnown RBP12.24□□□□□ -0.45
SYNE1-224ENST00000478916 NEUROD1Q13562 356 aa12.2□□□□□ -0.46
SYNE1-224ENST00000478916 ZNF326Q5BKZ1 582 aaKnown RBP12.2□□□□□ -0.46
SYNE1-224ENST00000478916 ANP32CO43423 234 aa12.18□□□□□ -0.46
SYNE1-224ENST00000478916 ESF1Q9H501 851 aaKnown RBP12.16□□□□□ -0.46
SYNE1-224ENST00000478916 SCRIBQ14160 1630 aa12.14□□□□□ -0.47
SYNE1-224ENST00000478916 NEFMP07197 916 aa12.12□□□□□ -0.47
SYNE1-224ENST00000478916 ARID3CA6NKF2 412 aa12.12□□□□□ -0.47
SYNE1-224ENST00000478916 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
SYNE1-224ENST00000478916 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNE1-224ENST00000478916 P3H3Q8IVL6 736 aa12.11□□□□□ -0.47
SYNE1-224ENST00000478916 ZNF777Q9ULD5 760 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-224ENST00000478916 ACIN1Q9UKV3 1341 aaKnown RBP12.1□□□□□ -0.47
SYNE1-224ENST00000478916 NPM2Q86SE8 214 aaKnown RBP12.09□□□□□ -0.47
SYNE1-224ENST00000478916 SLC24A1O60721 1099 aa12.08□□□□□ -0.48
SYNE1-224ENST00000478916 CSRNP3Q8WYN3 585 aa12.08□□□□□ -0.48
SYNE1-224ENST00000478916 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
SYNE1-224ENST00000478916 BCL11AQ9H165 835 aa12.02□□□□□ -0.48
SYNE1-224ENST00000478916 HSP90AA1P07900 732 aaKnown RBP12.02□□□□□ -0.49
SYNE1-224ENST00000478916 CCDC180Q9P1Z9 1646 aa11.99□□□□□ -0.49
SYNE1-224ENST00000478916 UPF2Q9HAU5 1272 aaKnown RBP11.98□□□□□ -0.49
SYNE1-224ENST00000478916 ZCCHC6Q5VYS8 1495 aaKnown RBP11.96□□□□□ -0.5
SYNE1-224ENST00000478916 CHGAP10645 457 aaKnown RBP11.95□□□□□ -0.5
SYNE1-224ENST00000478916 NBR1Q14596 966 aa11.94□□□□□ -0.5
SYNE1-224ENST00000478916 RB1CC1Q8TDY2 1594 aa11.94□□□□□ -0.5
SYNE1-224ENST00000478916 TNNT2P45379 298 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-224ENST00000478916 PLPPR3Q6T4P5 718 aa11.93□□□□□ -0.5
SYNE1-224ENST00000478916 FKBP8Q14318 412 aa11.92□□□□□ -0.5
SYNE1-224ENST00000478916 CHMP7Q8WUX9 453 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-224ENST00000478916 TONSLQ96HA7 1378 aa11.87□□□□□ -0.51
SYNE1-224ENST00000478916 ARXQ96QS3 562 aa11.85□□□□□ -0.51
SYNE1-224ENST00000478916 TSPY4P0CV99 314 aa11.83□□□□□ -0.52
SYNE1-224ENST00000478916 TSPY10P0CW01 314 aa11.83□□□□□ -0.52
SYNE1-224ENST00000478916 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.82□□□□□ -0.52
SYNE1-224ENST00000478916 TRIM44Q96DX7 344 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-224ENST00000478916 MTUS2Q5JR59 1369 aa11.79□□□□□ -0.52
SYNE1-224ENST00000478916 CDK11BP21127 795 aaKnown RBP11.78□□□□□ -0.52
SYNE1-224ENST00000478916 ANP32EQ9BTT0 268 aa11.77□□□□□ -0.52
SYNE1-224ENST00000478916 CCDC136Q96JN2 1154 aa11.77□□□□□ -0.52
SYNE1-224ENST00000478916 CHIC2Q9UKJ5 165 aa11.76□□□□□ -0.53
SYNE1-224ENST00000478916 NACADO15069 1562 aa11.75□□□□□ -0.53
SYNE1-224ENST00000478916 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
SYNE1-224ENST00000478916 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-224ENST00000478916 DDRGK1Q96HY6 314 aa11.73□□□□□ -0.53
SYNE1-224ENST00000478916 SCAF1Q9H7N4 1312 aaKnown RBP11.73□□□□□ -0.53
SYNE1-224ENST00000478916 ERCC6Q03468 1493 aa11.72□□□□□ -0.53
SYNE1-224ENST00000478916 BAZ1BQ9UIG0 1483 aaKnown RBP11.72□□□□□ -0.53
SYNE1-224ENST00000478916 PPP1R15AO75807 674 aaPredicted RBP11.72□□□□□ -0.53
SYNE1-224ENST00000478916 RSF1Q96T23 1441 aaPredicted RBP11.71□□□□□ -0.54
SYNE1-224ENST00000478916 PLEKHD1A6NEE1 506 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms