RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 MT1MQ8N339 61 aa4□□□□□ -1.77
NPHP3-ACAD11-201ENST00000471702 KRTAP20-1Q3LI63 56 aa3.99□□□□□ -1.77
NPHP3-ACAD11-201ENST00000471702 RYR3Q15413 4870 aa3.98□□□□□ -1.77
NPHP3-ACAD11-201ENST00000471702 FSIP2Q5CZC0 6907 aa3.97□□□□□ -1.77
NPHP3-ACAD11-201ENST00000471702 KRTAP19-6Q3LI70 58 aa3.96□□□□□ -1.78
NPHP3-ACAD11-201ENST00000471702 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
NPHP3-ACAD11-201ENST00000471702 KRTAP9-6A0A140TA67 174 aa3.88□□□□□ -1.79
NPHP3-ACAD11-201ENST00000471702 LCE2AQ5TA79 106 aaPredicted RBP3.86□□□□□ -1.79
NPHP3-ACAD11-201ENST00000471702 MUC17Q685J3 4493 aa3.77□□□□□ -1.81
NPHP3-ACAD11-201ENST00000471702 KMT2CQ8NEZ4 4911 aaKnown RBP3.75□□□□□ -1.81
NPHP3-ACAD11-201ENST00000471702 KRTAP9-7A8MTY7 169 aa3.75□□□□□ -1.81
NPHP3-ACAD11-201ENST00000471702 KRTAP2-3P0C7H8 128 aa3.71□□□□□ -1.82
NPHP3-ACAD11-201ENST00000471702 KRTAP2-4Q9BYR9 128 aa3.71□□□□□ -1.82
NPHP3-ACAD11-201ENST00000471702 KRTAP2-1Q9BYU5 128 aa3.71□□□□□ -1.82
NPHP3-ACAD11-201ENST00000471702 KRTAP19-2Q3LHN2 52 aa3.65□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 KRTAP6-2Q3LI66 62 aa3.65□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 HERC2O95714 4834 aa3.64□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 PCLOQ9Y6V0 5065 aa3.64□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 MT1AP04731 61 aa3.63□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 KIAA1109Q2LD37 5005 aa3.62□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 HYDINQ4G0P3 5121 aa3.61□□□□□ -1.83
NPHP3-ACAD11-201ENST00000471702 KRTAP19-7Q3SYF9 63 aa3.57□□□□□ -1.84
NPHP3-ACAD11-201ENST00000471702 BIRC6Q9NR09 4857 aa3.55□□□□□ -1.84
NPHP3-ACAD11-201ENST00000471702 OBSCNQ5VST9 7968 aa3.54□□□□□ -1.84
NPHP3-ACAD11-201ENST00000471702 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
NPHP3-ACAD11-201ENST00000471702 MUC2Q02817 5179 aa3.51□□□□□ -1.85
NPHP3-ACAD11-201ENST00000471702 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
NPHP3-ACAD11-201ENST00000471702 HERC1Q15751 4861 aa3.49□□□□□ -1.85
NPHP3-ACAD11-201ENST00000471702 DSTQ03001 7570 aaKnown RBP3.48□□□□□ -1.85
NPHP3-ACAD11-201ENST00000471702 EPPK1P58107 5090 aaKnown RBP3.46□□□□□ -1.86
NPHP3-ACAD11-201ENST00000471702 HMCN2Q8NDA2 5059 aa3.46□□□□□ -1.86
NPHP3-ACAD11-201ENST00000471702 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.44□□□□□ -1.86
NPHP3-ACAD11-201ENST00000471702 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
NPHP3-ACAD11-201ENST00000471702 KRTAP9-4Q9BYQ2 154 aa3.41□□□□□ -1.86
NPHP3-ACAD11-201ENST00000471702 KRTAP6-3Q3LI67 103 aa3.39□□□□□ -1.87
NPHP3-ACAD11-201ENST00000471702 RYR2Q92736 4967 aa3.38□□□□□ -1.87
NPHP3-ACAD11-201ENST00000471702 KRTAP9-6A8MVA2 160 aa3.36□□□□□ -1.87
NPHP3-ACAD11-201ENST00000471702 MACF1Q9UPN3 7388 aaKnown RBP3.32□□□□□ -1.88
NPHP3-ACAD11-201ENST00000471702 UBR4Q5T4S7 5183 aa3.28□□□□□ -1.88
NPHP3-ACAD11-201ENST00000471702 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
NPHP3-ACAD11-201ENST00000471702 FCGBPQ9Y6R7 5405 aaPredicted RBP3.2□□□□□ -1.9
NPHP3-ACAD11-201ENST00000471702 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
NPHP3-ACAD11-201ENST00000471702 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
NPHP3-ACAD11-201ENST00000471702 KRTAP4-12Q9BQ66 201 aa3.12□□□□□ -1.91
NPHP3-ACAD11-201ENST00000471702 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
NPHP3-ACAD11-201ENST00000471702 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
NPHP3-ACAD11-201ENST00000471702 KMT2DO14686 5537 aa3.11□□□□□ -1.91
NPHP3-ACAD11-201ENST00000471702 FAT4Q6V0I7 4981 aa3.1□□□□□ -1.91
NPHP3-ACAD11-201ENST00000471702 ABCA13Q86UQ4 5058 aa3.04□□□□□ -1.92
NPHP3-ACAD11-201ENST00000471702 RNF213Q63HN8 5207 aa2.98□□□□□ -1.93
NPHP3-ACAD11-201ENST00000471702 USH2AO75445 5202 aa2.76□□□□□ -1.97
NPHP3-ACAD11-201ENST00000471702 NEBP20929 6669 aa2.73□□□□□ -1.97
NPHP3-ACAD11-201ENST00000471702 KRTAP5-9P26371 169 aa2.6□□□□□ -1.99
NPHP3-ACAD11-201ENST00000471702 SSPOA2VEC9 5147 aa2.6□□□□□ -1.99
NPHP3-ACAD11-201ENST00000471702 MUC12Q9UKN1 5478 aa2.58□□□□□ -2
NPHP3-ACAD11-201ENST00000471702 KRTAP5-5Q701N2 237 aaPredicted RBP2.58□□□□□ -2
NPHP3-ACAD11-201ENST00000471702 KRTAP5-4Q6L8H1 288 aa2.45□□□□□ -2.02
NPHP3-ACAD11-201ENST00000471702 MDN1Q9NU22 5596 aa2.44□□□□□ -2.02
NPHP3-ACAD11-201ENST00000471702 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
NPHP3-ACAD11-201ENST00000471702 GPR98Q8WXG9 6306 aa2.42□□□□□ -2.02
NPHP3-ACAD11-201ENST00000471702 MUC5ACP98088 5654 aa2.31□□□□□ -2.04
NPHP3-ACAD11-201ENST00000471702 KRTAP5-3Q6L8H2 238 aa2.27□□□□□ -2.05
NPHP3-ACAD11-201ENST00000471702 KRTAP5-8O75690 187 aa2.13□□□□□ -2.07
NPHP3-ACAD11-201ENST00000471702 HMCN1Q96RW7 5635 aa2.02□□□□□ -2.09
NPHP3-ACAD11-201ENST00000471702 KRTAP5-2Q701N4 177 aa1.95□□□□□ -2.1
NPHP3-ACAD11-201ENST00000471702 KRTAP5-10Q6L8G5 202 aa1.92□□□□□ -2.1
NPHP3-ACAD11-201ENST00000471702 MUC5BQ9HC84 5762 aaPredicted RBP1.86□□□□□ -2.11
NPHP3-ACAD11-201ENST00000471702 KRTAP5-1Q6L8H4 278 aa1.74□□□□□ -2.13
NPHP3-ACAD11-201ENST00000471702 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
NPHP3-ACAD11-201ENST00000471702 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
NPHP3-ACAD11-201ENST00000471702 KRTAP5-11Q6L8G4 156 aa1.62□□□□□ -2.15
NPHP3-ACAD11-201ENST00000471702 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
NPHP3-ACAD11-201ENST00000471702 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
NPHP3-ACAD11-201ENST00000471702 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
NPHP3-ACAD11-201ENST00000471702 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.43□□□□□ -2.18
NPHP3-ACAD11-201ENST00000471702 KRTAP5-7Q6L8G8 165 aa1.21□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 5.9 ms