RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 HERC1Q15751 4861 aa2.07□□□□□ -2.08
VPS53-204ENST00000437048 KRTAP9-6A8MVA2 160 aa2.07□□□□□ -2.08
VPS53-204ENST00000437048 RYR3Q15413 4870 aa2.07□□□□□ -2.08
VPS53-204ENST00000437048 MT4P47944 62 aa2.07□□□□□ -2.08
VPS53-204ENST00000437048 MUC17Q685J3 4493 aa2.05□□□□□ -2.08
VPS53-204ENST00000437048 LCE1BQ5T7P3 118 aa2.04□□□□□ -2.08
VPS53-204ENST00000437048 KRTAP19-2Q3LHN2 52 aa2.03□□□□□ -2.08
VPS53-204ENST00000437048 KRTAP9-7A8MTY7 169 aa2.02□□□□□ -2.09
VPS53-204ENST00000437048 SYNE1Q8NF91 8797 aaKnown RBP2.01□□□□□ -2.09
VPS53-204ENST00000437048 LCE1DQ5T752 114 aa2□□□□□ -2.09
VPS53-204ENST00000437048 KIAA1109Q2LD37 5005 aa2□□□□□ -2.09
VPS53-204ENST00000437048 KRTAP19-7Q3SYF9 63 aa1.98□□□□□ -2.09
VPS53-204ENST00000437048 KMT2CQ8NEZ4 4911 aaKnown RBP1.95□□□□□ -2.1
VPS53-204ENST00000437048 SYNE2Q8WXH0 6885 aaKnown RBP1.93□□□□□ -2.1
VPS53-204ENST00000437048 LCE4AQ5TA78 99 aa1.92□□□□□ -2.1
VPS53-204ENST00000437048 HERC2O95714 4834 aa1.92□□□□□ -2.1
VPS53-204ENST00000437048 HMCN2Q8NDA2 5059 aa1.92□□□□□ -2.1
VPS53-204ENST00000437048 KRTAP9-6A0A140TA67 174 aa1.89□□□□□ -2.11
VPS53-204ENST00000437048 KRTAP6-2Q3LI66 62 aa1.89□□□□□ -2.11
VPS53-204ENST00000437048 KRTAP9-4Q9BYQ2 154 aa1.87□□□□□ -2.11
VPS53-204ENST00000437048 RNF213Q63HN8 5207 aa1.87□□□□□ -2.11
VPS53-204ENST00000437048 LCE5AQ5TCM9 118 aa1.87□□□□□ -2.11
VPS53-204ENST00000437048 KRTAP2-2Q9BYT5 123 aa1.86□□□□□ -2.11
VPS53-204ENST00000437048 EPPK1P58107 5090 aaKnown RBP1.84□□□□□ -2.12
VPS53-204ENST00000437048 KRTAP6-1Q3LI64 71 aa1.83□□□□□ -2.12
VPS53-204ENST00000437048 UBR4Q5T4S7 5183 aa1.83□□□□□ -2.12
VPS53-204ENST00000437048 KRTAP9-2Q9BYQ4 174 aa1.82□□□□□ -2.12
VPS53-204ENST00000437048 ABCA13Q86UQ4 5058 aa1.82□□□□□ -2.12
VPS53-204ENST00000437048 FSIP2Q5CZC0 6907 aa1.81□□□□□ -2.12
VPS53-204ENST00000437048 KRTAP4-11Q9BYQ6 195 aa1.8□□□□□ -2.12
VPS53-204ENST00000437048 OBSCNQ5VST9 7968 aa1.78□□□□□ -2.12
VPS53-204ENST00000437048 LCE1CQ5T751 118 aa1.78□□□□□ -2.12
VPS53-204ENST00000437048 LCE1EQ5T753 118 aa1.78□□□□□ -2.12
VPS53-204ENST00000437048 LCE1FQ5T754 118 aa1.78□□□□□ -2.12
VPS53-204ENST00000437048 KRTAP6-3Q3LI67 103 aa1.77□□□□□ -2.13
VPS53-204ENST00000437048 MACF1Q9UPN3 7388 aaKnown RBP1.77□□□□□ -2.13
VPS53-204ENST00000437048 KRTAP20-1Q3LI63 56 aa1.75□□□□□ -2.13
VPS53-204ENST00000437048 KRTAP4-4Q9BYR3 166 aa1.75□□□□□ -2.13
VPS53-204ENST00000437048 LCE2AQ5TA79 106 aaPredicted RBP1.74□□□□□ -2.13
VPS53-204ENST00000437048 FAT4Q6V0I7 4981 aa1.71□□□□□ -2.14
VPS53-204ENST00000437048 DSTQ03001 7570 aaKnown RBP1.7□□□□□ -2.14
VPS53-204ENST00000437048 MUC12Q9UKN1 5478 aa1.7□□□□□ -2.14
VPS53-204ENST00000437048 KMT2DO14686 5537 aa1.67□□□□□ -2.14
VPS53-204ENST00000437048 FCGBPQ9Y6R7 5405 aaPredicted RBP1.67□□□□□ -2.14
VPS53-204ENST00000437048 MUC2Q02817 5179 aa1.67□□□□□ -2.14
VPS53-204ENST00000437048 KRTAP4-12Q9BQ66 201 aa1.67□□□□□ -2.14
VPS53-204ENST00000437048 KRTAP4-2Q9BYR5 136 aa1.67□□□□□ -2.14
VPS53-204ENST00000437048 NEBP20929 6669 aa1.65□□□□□ -2.15
VPS53-204ENST00000437048 KRTAP4-6Q9BYQ5 205 aa1.63□□□□□ -2.15
VPS53-204ENST00000437048 KRTAP9-9Q9BYP9 154 aa1.61□□□□□ -2.15
VPS53-204ENST00000437048 MDN1Q9NU22 5596 aa1.6□□□□□ -2.15
VPS53-204ENST00000437048 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
VPS53-204ENST00000437048 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
VPS53-204ENST00000437048 GPR98Q8WXG9 6306 aa1.56□□□□□ -2.16
VPS53-204ENST00000437048 USH2AO75445 5202 aa1.55□□□□□ -2.16
VPS53-204ENST00000437048 KRTAP5-5Q701N2 237 aaPredicted RBP1.54□□□□□ -2.16
VPS53-204ENST00000437048 KRTAP20-2Q3LI61 65 aa1.52□□□□□ -2.17
VPS53-204ENST00000437048 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.5□□□□□ -2.17
VPS53-204ENST00000437048 SSPOA2VEC9 5147 aa1.48□□□□□ -2.17
VPS53-204ENST00000437048 AHNAK2Q8IVF2 5795 aa1.42□□□□□ -2.18
VPS53-204ENST00000437048 KRTAP5-4Q6L8H1 288 aa1.41□□□□□ -2.18
VPS53-204ENST00000437048 MUC5ACP98088 5654 aa1.32□□□□□ -2.2
VPS53-204ENST00000437048 HMCN1Q96RW7 5635 aa1.25□□□□□ -2.21
VPS53-204ENST00000437048 KRTAP5-3Q6L8H2 238 aa1.25□□□□□ -2.21
VPS53-204ENST00000437048 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
VPS53-204ENST00000437048 KRTAP5-10Q6L8G5 202 aa1.21□□□□□ -2.22
VPS53-204ENST00000437048 MUC5BQ9HC84 5762 aaPredicted RBP1.18□□□□□ -2.22
VPS53-204ENST00000437048 KRTAP5-2Q701N4 177 aa1.18□□□□□ -2.22
VPS53-204ENST00000437048 KRTAP5-11Q6L8G4 156 aa1.13□□□□□ -2.23
VPS53-204ENST00000437048 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.1□□□□□ -2.23
VPS53-204ENST00000437048 KRTAP5-8O75690 187 aa1.09□□□□□ -2.24
VPS53-204ENST00000437048 KRTAP21-1Q3LI58 79 aa1.05□□□□□ -2.24
VPS53-204ENST00000437048 KRTAP5-1Q6L8H4 278 aa1□□□□□ -2.25
VPS53-204ENST00000437048 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
VPS53-204ENST00000437048 KRTAP21-2Q3LI59 83 aa0.94□□□□□ -2.26
VPS53-204ENST00000437048 KRTAP5-7Q6L8G8 165 aa0.87□□□□□ -2.27
VPS53-204ENST00000437048 MUC16Q8WXI7 14507 aa0.79□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 71.4 ms