RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 RYR3Q15413 4870 aa4.45□□□□□ -1.7
RIF1-204ENST00000430328 HYDINQ4G0P3 5121 aa4.43□□□□□ -1.7
RIF1-204ENST00000430328 LPAP08519 4548 aa4.42□□□□□ -1.7
RIF1-204ENST00000430328 TNXBP22105 4242 aa4.42□□□□□ -1.7
RIF1-204ENST00000430328 KRTAP19-6Q3LI70 58 aa4.41□□□□□ -1.7
RIF1-204ENST00000430328 LCE4AQ5TA78 99 aa4.38□□□□□ -1.71
RIF1-204ENST00000430328 SYNE2Q8WXH0 6885 aaKnown RBP4.3□□□□□ -1.72
RIF1-204ENST00000430328 RYR2Q92736 4967 aa4.26□□□□□ -1.73
RIF1-204ENST00000430328 KRTAP20-1Q3LI63 56 aa4.25□□□□□ -1.73
RIF1-204ENST00000430328 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
RIF1-204ENST00000430328 KIAA1109Q2LD37 5005 aa4.24□□□□□ -1.73
RIF1-204ENST00000430328 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
RIF1-204ENST00000430328 SYNE1Q8NF91 8797 aaKnown RBP4.23□□□□□ -1.73
RIF1-204ENST00000430328 KRTAP9-7A8MTY7 169 aa4.2□□□□□ -1.74
RIF1-204ENST00000430328 KRTAP9-4Q9BYQ2 154 aa4.2□□□□□ -1.74
RIF1-204ENST00000430328 KRTAP19-7Q3SYF9 63 aa4.2□□□□□ -1.74
RIF1-204ENST00000430328 MUC17Q685J3 4493 aa4.19□□□□□ -1.74
RIF1-204ENST00000430328 LRP2P98164 4655 aa4.19□□□□□ -1.74
RIF1-204ENST00000430328 KRTAP6-1Q3LI64 71 aa4.16□□□□□ -1.74
RIF1-204ENST00000430328 HERC1Q15751 4861 aa4.15□□□□□ -1.75
RIF1-204ENST00000430328 KRTAP9-6A0A140TA67 174 aa4.1□□□□□ -1.75
RIF1-204ENST00000430328 BIRC6Q9NR09 4857 aa4.09□□□□□ -1.75
RIF1-204ENST00000430328 KMT2CQ8NEZ4 4911 aaKnown RBP4.08□□□□□ -1.76
RIF1-204ENST00000430328 HERC2O95714 4834 aa4.04□□□□□ -1.76
RIF1-204ENST00000430328 LCE2AQ5TA79 106 aaPredicted RBP4□□□□□ -1.77
RIF1-204ENST00000430328 KRTAP19-2Q3LHN2 52 aa3.99□□□□□ -1.77
RIF1-204ENST00000430328 KRTAP9-9Q9BYP9 154 aa3.92□□□□□ -1.78
RIF1-204ENST00000430328 EPPK1P58107 5090 aaKnown RBP3.9□□□□□ -1.78
RIF1-204ENST00000430328 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
RIF1-204ENST00000430328 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.79
RIF1-204ENST00000430328 ABCA13Q86UQ4 5058 aa3.81□□□□□ -1.8
RIF1-204ENST00000430328 PCLOQ9Y6V0 5065 aa3.77□□□□□ -1.81
RIF1-204ENST00000430328 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
RIF1-204ENST00000430328 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
RIF1-204ENST00000430328 KRTAP20-2Q3LI61 65 aa3.71□□□□□ -1.82
RIF1-204ENST00000430328 HMCN2Q8NDA2 5059 aa3.65□□□□□ -1.83
RIF1-204ENST00000430328 FSIP2Q5CZC0 6907 aa3.62□□□□□ -1.83
RIF1-204ENST00000430328 FAT4Q6V0I7 4981 aa3.61□□□□□ -1.83
RIF1-204ENST00000430328 UBR4Q5T4S7 5183 aa3.51□□□□□ -1.85
RIF1-204ENST00000430328 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.49□□□□□ -1.85
RIF1-204ENST00000430328 RNF213Q63HN8 5207 aa3.48□□□□□ -1.85
RIF1-204ENST00000430328 KRTAP4-4Q9BYR3 166 aa3.42□□□□□ -1.86
RIF1-204ENST00000430328 MUC2Q02817 5179 aa3.36□□□□□ -1.87
RIF1-204ENST00000430328 KRTAP4-6Q9BYQ5 205 aa3.35□□□□□ -1.87
RIF1-204ENST00000430328 KRTAP4-12Q9BQ66 201 aa3.31□□□□□ -1.88
RIF1-204ENST00000430328 KRTAP4-2Q9BYR5 136 aa3.31□□□□□ -1.88
RIF1-204ENST00000430328 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
RIF1-204ENST00000430328 DSTQ03001 7570 aaKnown RBP3.21□□□□□ -1.9
RIF1-204ENST00000430328 MACF1Q9UPN3 7388 aaKnown RBP3.18□□□□□ -1.9
RIF1-204ENST00000430328 KMT2DO14686 5537 aa3.13□□□□□ -1.91
RIF1-204ENST00000430328 FCGBPQ9Y6R7 5405 aaPredicted RBP3.01□□□□□ -1.93
RIF1-204ENST00000430328 KRTAP5-5Q701N2 237 aaPredicted RBP2.97□□□□□ -1.93
RIF1-204ENST00000430328 USH2AO75445 5202 aa2.95□□□□□ -1.94
RIF1-204ENST00000430328 KRTAP5-9P26371 169 aa2.85□□□□□ -1.95
RIF1-204ENST00000430328 KRTAP5-4Q6L8H1 288 aa2.85□□□□□ -1.95
RIF1-204ENST00000430328 SSPOA2VEC9 5147 aa2.85□□□□□ -1.95
RIF1-204ENST00000430328 MDN1Q9NU22 5596 aa2.72□□□□□ -1.97
RIF1-204ENST00000430328 NEBP20929 6669 aa2.72□□□□□ -1.97
RIF1-204ENST00000430328 MUC12Q9UKN1 5478 aa2.69□□□□□ -1.98
RIF1-204ENST00000430328 PHGR1C9JFL3 82 aa2.59□□□□□ -1.99
RIF1-204ENST00000430328 KRTAP5-3Q6L8H2 238 aa2.46□□□□□ -2.02
RIF1-204ENST00000430328 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
RIF1-204ENST00000430328 KRTAP5-10Q6L8G5 202 aa2.37□□□□□ -2.03
RIF1-204ENST00000430328 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
RIF1-204ENST00000430328 MUC5ACP98088 5654 aa2.3□□□□□ -2.04
RIF1-204ENST00000430328 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
RIF1-204ENST00000430328 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
RIF1-204ENST00000430328 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
RIF1-204ENST00000430328 KRTAP5-1Q6L8H4 278 aa2.04□□□□□ -2.08
RIF1-204ENST00000430328 HMCN1Q96RW7 5635 aa2□□□□□ -2.09
RIF1-204ENST00000430328 KRTAP5-11Q6L8G4 156 aa1.99□□□□□ -2.09
RIF1-204ENST00000430328 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
RIF1-204ENST00000430328 AHNAK2Q8IVF2 5795 aa1.79□□□□□ -2.12
RIF1-204ENST00000430328 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
RIF1-204ENST00000430328 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.14
RIF1-204ENST00000430328 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
RIF1-204ENST00000430328 KRTAP5-7Q6L8G8 165 aa1.37□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms