RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 LCE1DQ5T752 114 aa3.75□□□□□ -1.81
LDB3-205ENST00000429277 LOC100996750A0A140TA64 210 aa3.72□□□□□ -1.81
LDB3-205ENST00000429277 KRTAP9-6A0A140TA67 174 aa3.71□□□□□ -1.82
LDB3-205ENST00000429277 KRTAP19-7Q3SYF9 63 aa3.71□□□□□ -1.82
LDB3-205ENST00000429277 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
LDB3-205ENST00000429277 LCE2AQ5TA79 106 aaPredicted RBP3.69□□□□□ -1.82
LDB3-205ENST00000429277 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
LDB3-205ENST00000429277 LCE1AQ5T7P2 110 aa3.67□□□□□ -1.82
LDB3-205ENST00000429277 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
LDB3-205ENST00000429277 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
LDB3-205ENST00000429277 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
LDB3-205ENST00000429277 ABCA13Q86UQ4 5058 aa3.64□□□□□ -1.83
LDB3-205ENST00000429277 PKHD1P08F94 4074 aa3.62□□□□□ -1.83
LDB3-205ENST00000429277 HYDINQ4G0P3 5121 aa3.6□□□□□ -1.83
LDB3-205ENST00000429277 LPAP08519 4548 aa3.59□□□□□ -1.83
LDB3-205ENST00000429277 KRTAP20-1Q3LI63 56 aa3.58□□□□□ -1.84
LDB3-205ENST00000429277 TNXBP22105 4242 aa3.56□□□□□ -1.84
LDB3-205ENST00000429277 KRTAP6-3Q3LI67 103 aa3.55□□□□□ -1.84
LDB3-205ENST00000429277 LCE5AQ5TCM9 118 aa3.55□□□□□ -1.84
LDB3-205ENST00000429277 RNF213Q63HN8 5207 aa3.53□□□□□ -1.84
LDB3-205ENST00000429277 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
LDB3-205ENST00000429277 KRTAP9-4Q9BYQ2 154 aa3.46□□□□□ -1.86
LDB3-205ENST00000429277 KRTAP9-7A8MTY7 169 aa3.45□□□□□ -1.86
LDB3-205ENST00000429277 FAT4Q6V0I7 4981 aa3.45□□□□□ -1.86
LDB3-205ENST00000429277 KRTAP4-9Q9BYQ8 210 aa3.45□□□□□ -1.86
LDB3-205ENST00000429277 UBR4Q5T4S7 5183 aa3.44□□□□□ -1.86
LDB3-205ENST00000429277 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
LDB3-205ENST00000429277 KRTAP6-2Q3LI66 62 aa3.4□□□□□ -1.87
LDB3-205ENST00000429277 HMCN2Q8NDA2 5059 aa3.39□□□□□ -1.87
LDB3-205ENST00000429277 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
LDB3-205ENST00000429277 OBSCNQ5VST9 7968 aa3.36□□□□□ -1.87
LDB3-205ENST00000429277 FSIP2Q5CZC0 6907 aa3.31□□□□□ -1.88
LDB3-205ENST00000429277 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
LDB3-205ENST00000429277 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.3□□□□□ -1.88
LDB3-205ENST00000429277 MUC2Q02817 5179 aa3.3□□□□□ -1.88
LDB3-205ENST00000429277 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
LDB3-205ENST00000429277 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
LDB3-205ENST00000429277 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
LDB3-205ENST00000429277 LCE1FQ5T754 118 aa3.24□□□□□ -1.89
LDB3-205ENST00000429277 KRTAP9-9Q9BYP9 154 aa3.05□□□□□ -1.92
LDB3-205ENST00000429277 KRTAP5-9P26371 169 aa2.94□□□□□ -1.94
LDB3-205ENST00000429277 USH2AO75445 5202 aa2.93□□□□□ -1.94
LDB3-205ENST00000429277 MACF1Q9UPN3 7388 aaKnown RBP2.87□□□□□ -1.95
LDB3-205ENST00000429277 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
LDB3-205ENST00000429277 FCGBPQ9Y6R7 5405 aaPredicted RBP2.81□□□□□ -1.96
LDB3-205ENST00000429277 KRTAP20-2Q3LI61 65 aa2.81□□□□□ -1.96
LDB3-205ENST00000429277 NEBP20929 6669 aa2.81□□□□□ -1.96
LDB3-205ENST00000429277 DSTQ03001 7570 aaKnown RBP2.78□□□□□ -1.96
LDB3-205ENST00000429277 KMT2DO14686 5537 aa2.76□□□□□ -1.97
LDB3-205ENST00000429277 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
LDB3-205ENST00000429277 KRTAP4-6Q9BYQ5 205 aa2.74□□□□□ -1.97
LDB3-205ENST00000429277 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
LDB3-205ENST00000429277 MUC12Q9UKN1 5478 aa2.7□□□□□ -1.98
LDB3-205ENST00000429277 SSPOA2VEC9 5147 aa2.7□□□□□ -1.98
LDB3-205ENST00000429277 KRTAP5-4Q6L8H1 288 aa2.66□□□□□ -1.98
LDB3-205ENST00000429277 MDN1Q9NU22 5596 aa2.59□□□□□ -1.99
LDB3-205ENST00000429277 KRTAP4-4Q9BYR3 166 aa2.48□□□□□ -2.01
LDB3-205ENST00000429277 KRTAP4-12Q9BQ66 201 aa2.46□□□□□ -2.02
LDB3-205ENST00000429277 KRTAP4-2Q9BYR5 136 aa2.46□□□□□ -2.02
LDB3-205ENST00000429277 KRTAP5-5Q701N2 237 aaPredicted RBP2.45□□□□□ -2.02
LDB3-205ENST00000429277 KRTAP5-3Q6L8H2 238 aa2.33□□□□□ -2.04
LDB3-205ENST00000429277 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
LDB3-205ENST00000429277 MUC5ACP98088 5654 aa2.16□□□□□ -2.06
LDB3-205ENST00000429277 HMCN1Q96RW7 5635 aa2.09□□□□□ -2.07
LDB3-205ENST00000429277 KRTAP5-8O75690 187 aa2.04□□□□□ -2.08
LDB3-205ENST00000429277 KRTAP5-10Q6L8G5 202 aa2.03□□□□□ -2.08
LDB3-205ENST00000429277 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
LDB3-205ENST00000429277 PHGR1C9JFL3 82 aa1.92□□□□□ -2.1
LDB3-205ENST00000429277 MUC5BQ9HC84 5762 aaPredicted RBP1.91□□□□□ -2.1
LDB3-205ENST00000429277 KRTAP5-11Q6L8G4 156 aa1.9□□□□□ -2.11
LDB3-205ENST00000429277 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.11
LDB3-205ENST00000429277 KRTAP5-1Q6L8H4 278 aa1.77□□□□□ -2.13
LDB3-205ENST00000429277 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
LDB3-205ENST00000429277 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
LDB3-205ENST00000429277 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.66□□□□□ -2.14
LDB3-205ENST00000429277 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
LDB3-205ENST00000429277 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 9.7 ms