RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 LCE1BQ5T7P3 118 aa3.58□□□□□ -1.84
UBR4-205ENST00000417040 MT3P25713 68 aa3.56□□□□□ -1.84
UBR4-205ENST00000417040 LCE1DQ5T752 114 aa3.54□□□□□ -1.84
UBR4-205ENST00000417040 KRTAP2-3P0C7H8 128 aa3.46□□□□□ -1.86
UBR4-205ENST00000417040 KRTAP2-4Q9BYR9 128 aa3.46□□□□□ -1.86
UBR4-205ENST00000417040 KRTAP2-1Q9BYU5 128 aa3.46□□□□□ -1.86
UBR4-205ENST00000417040 KRTAP19-7Q3SYF9 63 aa3.45□□□□□ -1.86
UBR4-205ENST00000417040 PCLOQ9Y6V0 5065 aa3.41□□□□□ -1.86
UBR4-205ENST00000417040 KRTAP19-6Q3LI70 58 aa3.39□□□□□ -1.87
UBR4-205ENST00000417040 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
UBR4-205ENST00000417040 HMCN2Q8NDA2 5059 aa3.37□□□□□ -1.87
UBR4-205ENST00000417040 SYNE2Q8WXH0 6885 aaKnown RBP3.37□□□□□ -1.87
UBR4-205ENST00000417040 MT1AP04731 61 aa3.36□□□□□ -1.87
UBR4-205ENST00000417040 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
UBR4-205ENST00000417040 BIRC6Q9NR09 4857 aa3.33□□□□□ -1.88
UBR4-205ENST00000417040 KRTAP9-7A8MTY7 169 aa3.32□□□□□ -1.88
UBR4-205ENST00000417040 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
UBR4-205ENST00000417040 LCE5AQ5TCM9 118 aa3.29□□□□□ -1.88
UBR4-205ENST00000417040 KRTAP9-2Q9BYQ4 174 aa3.26□□□□□ -1.89
UBR4-205ENST00000417040 FAT4Q6V0I7 4981 aa3.2□□□□□ -1.9
UBR4-205ENST00000417040 ABCA13Q86UQ4 5058 aa3.19□□□□□ -1.9
UBR4-205ENST00000417040 KRTAP9-6A0A140TA67 174 aa3.18□□□□□ -1.9
UBR4-205ENST00000417040 EPPK1P58107 5090 aaKnown RBP3.18□□□□□ -1.9
UBR4-205ENST00000417040 FSIP2Q5CZC0 6907 aa3.16□□□□□ -1.9
UBR4-205ENST00000417040 KRTAP9-4Q9BYQ2 154 aa3.16□□□□□ -1.9
UBR4-205ENST00000417040 KRTAP20-1Q3LI63 56 aa3.15□□□□□ -1.91
UBR4-205ENST00000417040 LCE2AQ5TA79 106 aaPredicted RBP3.13□□□□□ -1.91
UBR4-205ENST00000417040 UBR4Q5T4S7 5183 aa3.11□□□□□ -1.91
UBR4-205ENST00000417040 RNF213Q63HN8 5207 aa3.06□□□□□ -1.92
UBR4-205ENST00000417040 MUC2Q02817 5179 aa3.03□□□□□ -1.92
UBR4-205ENST00000417040 LCE1CQ5T751 118 aa3.02□□□□□ -1.93
UBR4-205ENST00000417040 LCE1EQ5T753 118 aa3.02□□□□□ -1.93
UBR4-205ENST00000417040 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
UBR4-205ENST00000417040 LCE1AQ5T7P2 110 aa3.02□□□□□ -1.93
UBR4-205ENST00000417040 SYNE1Q8NF91 8797 aaKnown RBP3.01□□□□□ -1.93
UBR4-205ENST00000417040 KMT2DO14686 5537 aa2.94□□□□□ -1.94
UBR4-205ENST00000417040 KRTAP2-2Q9BYT5 123 aa2.94□□□□□ -1.94
UBR4-205ENST00000417040 OBSCNQ5VST9 7968 aa2.91□□□□□ -1.94
UBR4-205ENST00000417040 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
UBR4-205ENST00000417040 LCE4AQ5TA78 99 aa2.84□□□□□ -1.95
UBR4-205ENST00000417040 KRTAP6-3Q3LI67 103 aa2.83□□□□□ -1.96
UBR4-205ENST00000417040 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.78□□□□□ -1.97
UBR4-205ENST00000417040 FCGBPQ9Y6R7 5405 aaPredicted RBP2.77□□□□□ -1.97
UBR4-205ENST00000417040 USH2AO75445 5202 aa2.68□□□□□ -1.98
UBR4-205ENST00000417040 DSTQ03001 7570 aaKnown RBP2.67□□□□□ -1.98
UBR4-205ENST00000417040 SSPOA2VEC9 5147 aa2.67□□□□□ -1.98
UBR4-205ENST00000417040 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
UBR4-205ENST00000417040 KRTAP4-6Q9BYQ5 205 aa2.64□□□□□ -1.99
UBR4-205ENST00000417040 KRTAP9-9Q9BYP9 154 aa2.61□□□□□ -1.99
UBR4-205ENST00000417040 KRTAP5-5Q701N2 237 aaPredicted RBP2.57□□□□□ -2
UBR4-205ENST00000417040 KRTAP20-2Q3LI61 65 aa2.56□□□□□ -2
UBR4-205ENST00000417040 KRTAP4-12Q9BQ66 201 aa2.51□□□□□ -2.01
UBR4-205ENST00000417040 KRTAP4-2Q9BYR5 136 aa2.51□□□□□ -2.01
UBR4-205ENST00000417040 MACF1Q9UPN3 7388 aaKnown RBP2.51□□□□□ -2.01
UBR4-205ENST00000417040 MUC12Q9UKN1 5478 aa2.41□□□□□ -2.02
UBR4-205ENST00000417040 KRTAP5-9P26371 169 aa2.38□□□□□ -2.03
UBR4-205ENST00000417040 NEBP20929 6669 aa2.33□□□□□ -2.04
UBR4-205ENST00000417040 KRTAP5-4Q6L8H1 288 aa2.21□□□□□ -2.06
UBR4-205ENST00000417040 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
UBR4-205ENST00000417040 MDN1Q9NU22 5596 aa2.03□□□□□ -2.08
UBR4-205ENST00000417040 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
UBR4-205ENST00000417040 KRTAP5-10Q6L8G5 202 aa1.92□□□□□ -2.1
UBR4-205ENST00000417040 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
UBR4-205ENST00000417040 KRTAP5-3Q6L8H2 238 aa1.89□□□□□ -2.11
UBR4-205ENST00000417040 KRTAP5-2Q701N4 177 aa1.88□□□□□ -2.11
UBR4-205ENST00000417040 KRTAP5-8O75690 187 aa1.8□□□□□ -2.12
UBR4-205ENST00000417040 HMCN1Q96RW7 5635 aa1.77□□□□□ -2.13
UBR4-205ENST00000417040 PHGR1C9JFL3 82 aa1.76□□□□□ -2.13
UBR4-205ENST00000417040 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
UBR4-205ENST00000417040 KRTAP21-2Q3LI59 83 aa1.6□□□□□ -2.15
UBR4-205ENST00000417040 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
UBR4-205ENST00000417040 MUC5BQ9HC84 5762 aaPredicted RBP1.56□□□□□ -2.16
UBR4-205ENST00000417040 AHNAK2Q8IVF2 5795 aa1.54□□□□□ -2.16
UBR4-205ENST00000417040 KRTAP5-11Q6L8G4 156 aa1.52□□□□□ -2.17
UBR4-205ENST00000417040 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
UBR4-205ENST00000417040 AHNAKQ09666 5890 aaKnown RBP1.41□□□□□ -2.18
UBR4-205ENST00000417040 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.28□□□□□ -2.21
UBR4-205ENST00000417040 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 10.5 ms