RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 MT1EP04732 61 aa4.67□□□□□ -1.66
PCDHA11-201ENST00000398640 KRTAP20-1Q3LI63 56 aa4.66□□□□□ -1.66
PCDHA11-201ENST00000398640 FAT4Q6V0I7 4981 aa4.65□□□□□ -1.66
PCDHA11-201ENST00000398640 MT1LQ93083 61 aa4.64□□□□□ -1.67
PCDHA11-201ENST00000398640 LCE3EQ5T5B0 92 aa4.62□□□□□ -1.67
PCDHA11-201ENST00000398640 RNF213Q63HN8 5207 aa4.61□□□□□ -1.67
PCDHA11-201ENST00000398640 KRTAP6-3Q3LI67 103 aa4.58□□□□□ -1.68
PCDHA11-201ENST00000398640 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.56□□□□□ -1.68
PCDHA11-201ENST00000398640 MT1MQ8N339 61 aa4.54□□□□□ -1.68
PCDHA11-201ENST00000398640 HMCN2Q8NDA2 5059 aa4.54□□□□□ -1.68
PCDHA11-201ENST00000398640 LOC100996750A0A140TA64 210 aa4.53□□□□□ -1.68
PCDHA11-201ENST00000398640 LCE1BQ5T7P3 118 aa4.48□□□□□ -1.69
PCDHA11-201ENST00000398640 UBR4Q5T4S7 5183 aa4.47□□□□□ -1.69
PCDHA11-201ENST00000398640 KRTAP4-3Q9BYR4 195 aa4.46□□□□□ -1.7
PCDHA11-201ENST00000398640 LCE1DQ5T752 114 aa4.44□□□□□ -1.7
PCDHA11-201ENST00000398640 KRTAP2-3P0C7H8 128 aa4.44□□□□□ -1.7
PCDHA11-201ENST00000398640 KRTAP2-4Q9BYR9 128 aa4.44□□□□□ -1.7
PCDHA11-201ENST00000398640 MT3P25713 68 aa4.41□□□□□ -1.7
PCDHA11-201ENST00000398640 LCE1AQ5T7P2 110 aa4.34□□□□□ -1.71
PCDHA11-201ENST00000398640 PRM1P04553 51 aa4.33□□□□□ -1.72
PCDHA11-201ENST00000398640 FSIP2Q5CZC0 6907 aa4.31□□□□□ -1.72
PCDHA11-201ENST00000398640 KRTAP19-7Q3SYF9 63 aa4.28□□□□□ -1.72
PCDHA11-201ENST00000398640 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
PCDHA11-201ENST00000398640 KRTAP2-1Q9BYU5 128 aa4.27□□□□□ -1.73
PCDHA11-201ENST00000398640 LCE5AQ5TCM9 118 aa4.24□□□□□ -1.73
PCDHA11-201ENST00000398640 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
PCDHA11-201ENST00000398640 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
PCDHA11-201ENST00000398640 LCE4AQ5TA78 99 aa4.17□□□□□ -1.74
PCDHA11-201ENST00000398640 MT1AP04731 61 aa4.16□□□□□ -1.74
PCDHA11-201ENST00000398640 MUC2Q02817 5179 aa4.07□□□□□ -1.76
PCDHA11-201ENST00000398640 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
PCDHA11-201ENST00000398640 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
PCDHA11-201ENST00000398640 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
PCDHA11-201ENST00000398640 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
PCDHA11-201ENST00000398640 KRTAP6-2Q3LI66 62 aa3.93□□□□□ -1.78
PCDHA11-201ENST00000398640 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
PCDHA11-201ENST00000398640 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
PCDHA11-201ENST00000398640 KRTAP5-9P26371 169 aa3.87□□□□□ -1.79
PCDHA11-201ENST00000398640 USH2AO75445 5202 aa3.8□□□□□ -1.8
PCDHA11-201ENST00000398640 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
PCDHA11-201ENST00000398640 NEBP20929 6669 aa3.76□□□□□ -1.81
PCDHA11-201ENST00000398640 SSPOA2VEC9 5147 aa3.76□□□□□ -1.81
PCDHA11-201ENST00000398640 MACF1Q9UPN3 7388 aaKnown RBP3.71□□□□□ -1.82
PCDHA11-201ENST00000398640 OBSCNQ5VST9 7968 aa3.68□□□□□ -1.82
PCDHA11-201ENST00000398640 KRTAP9-9Q9BYP9 154 aa3.62□□□□□ -1.83
PCDHA11-201ENST00000398640 FCGBPQ9Y6R7 5405 aaPredicted RBP3.58□□□□□ -1.84
PCDHA11-201ENST00000398640 KRTAP4-6Q9BYQ5 205 aa3.52□□□□□ -1.85
PCDHA11-201ENST00000398640 KRTAP20-2Q3LI61 65 aa3.48□□□□□ -1.85
PCDHA11-201ENST00000398640 KMT2DO14686 5537 aa3.43□□□□□ -1.86
PCDHA11-201ENST00000398640 KRTAP5-4Q6L8H1 288 aa3.36□□□□□ -1.87
PCDHA11-201ENST00000398640 DSTQ03001 7570 aaKnown RBP3.32□□□□□ -1.88
PCDHA11-201ENST00000398640 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
PCDHA11-201ENST00000398640 KRTAP4-12Q9BQ66 201 aa3.17□□□□□ -1.9
PCDHA11-201ENST00000398640 KRTAP4-2Q9BYR5 136 aa3.17□□□□□ -1.9
PCDHA11-201ENST00000398640 MUC12Q9UKN1 5478 aa3.16□□□□□ -1.9
PCDHA11-201ENST00000398640 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
PCDHA11-201ENST00000398640 MDN1Q9NU22 5596 aa3.11□□□□□ -1.91
PCDHA11-201ENST00000398640 KRTAP5-5Q701N2 237 aaPredicted RBP3.04□□□□□ -1.92
PCDHA11-201ENST00000398640 KRTAP5-3Q6L8H2 238 aa3.02□□□□□ -1.93
PCDHA11-201ENST00000398640 GPR98Q8WXG9 6306 aa2.96□□□□□ -1.94
PCDHA11-201ENST00000398640 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
PCDHA11-201ENST00000398640 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
PCDHA11-201ENST00000398640 KRTAP5-2Q701N4 177 aa2.6□□□□□ -1.99
PCDHA11-201ENST00000398640 MUC5ACP98088 5654 aa2.59□□□□□ -1.99
PCDHA11-201ENST00000398640 AHNAK2Q8IVF2 5795 aa2.59□□□□□ -1.99
PCDHA11-201ENST00000398640 HMCN1Q96RW7 5635 aa2.57□□□□□ -2
PCDHA11-201ENST00000398640 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
PCDHA11-201ENST00000398640 KRTAP5-10Q6L8G5 202 aa2.38□□□□□ -2.03
PCDHA11-201ENST00000398640 KRTAP5-7Q6L8G8 165 aa2.33□□□□□ -2.04
PCDHA11-201ENST00000398640 KRTAP5-1Q6L8H4 278 aa2.29□□□□□ -2.04
PCDHA11-201ENST00000398640 MUC5BQ9HC84 5762 aaPredicted RBP2.24□□□□□ -2.05
PCDHA11-201ENST00000398640 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
PCDHA11-201ENST00000398640 AHNAKQ09666 5890 aaKnown RBP2.2□□□□□ -2.06
PCDHA11-201ENST00000398640 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
PCDHA11-201ENST00000398640 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
PCDHA11-201ENST00000398640 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
PCDHA11-201ENST00000398640 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 131.9 ms