RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 LRP2P98164 4655 aa3.56□□□□□ -1.84
SYNPO-202ENST00000394243 MT1MQ8N339 61 aa3.54□□□□□ -1.84
SYNPO-202ENST00000394243 KRTAP4-3Q9BYR4 195 aa3.53□□□□□ -1.84
SYNPO-202ENST00000394243 KRTAP4-9Q9BYQ8 210 aa3.48□□□□□ -1.85
SYNPO-202ENST00000394243 KRTAP2-3P0C7H8 128 aa3.45□□□□□ -1.86
SYNPO-202ENST00000394243 KRTAP2-4Q9BYR9 128 aa3.45□□□□□ -1.86
SYNPO-202ENST00000394243 KRTAP2-1Q9BYU5 128 aa3.45□□□□□ -1.86
SYNPO-202ENST00000394243 BIRC6Q9NR09 4857 aa3.45□□□□□ -1.86
SYNPO-202ENST00000394243 KIAA1109Q2LD37 5005 aa3.42□□□□□ -1.86
SYNPO-202ENST00000394243 RYR2Q92736 4967 aa3.41□□□□□ -1.86
SYNPO-202ENST00000394243 EPPK1P58107 5090 aaKnown RBP3.41□□□□□ -1.86
SYNPO-202ENST00000394243 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.87
SYNPO-202ENST00000394243 KRTAP9-7A8MTY7 169 aa3.39□□□□□ -1.87
SYNPO-202ENST00000394243 LCE4AQ5TA78 99 aa3.38□□□□□ -1.87
SYNPO-202ENST00000394243 LCE2AQ5TA79 106 aaPredicted RBP3.35□□□□□ -1.87
SYNPO-202ENST00000394243 HERC2O95714 4834 aa3.35□□□□□ -1.87
SYNPO-202ENST00000394243 SYNE1Q8NF91 8797 aaKnown RBP3.35□□□□□ -1.87
SYNPO-202ENST00000394243 KRTAP19-7Q3SYF9 63 aa3.32□□□□□ -1.88
SYNPO-202ENST00000394243 MT1AP04731 61 aa3.31□□□□□ -1.88
SYNPO-202ENST00000394243 KRTAP19-6Q3LI70 58 aa3.3□□□□□ -1.88
SYNPO-202ENST00000394243 KRTAP6-2Q3LI66 62 aa3.29□□□□□ -1.88
SYNPO-202ENST00000394243 MUC17Q685J3 4493 aa3.28□□□□□ -1.88
SYNPO-202ENST00000394243 HERC1Q15751 4861 aa3.27□□□□□ -1.89
SYNPO-202ENST00000394243 KRTAP9-6A8MVA2 160 aa3.23□□□□□ -1.89
SYNPO-202ENST00000394243 MUC2Q02817 5179 aa3.21□□□□□ -1.9
SYNPO-202ENST00000394243 PCLOQ9Y6V0 5065 aa3.21□□□□□ -1.9
SYNPO-202ENST00000394243 KRTAP6-1Q3LI64 71 aa3.15□□□□□ -1.9
SYNPO-202ENST00000394243 SYNE2Q8WXH0 6885 aaKnown RBP3.15□□□□□ -1.91
SYNPO-202ENST00000394243 ABCA13Q86UQ4 5058 aa3.14□□□□□ -1.91
SYNPO-202ENST00000394243 FSIP2Q5CZC0 6907 aa3.09□□□□□ -1.91
SYNPO-202ENST00000394243 HMCN2Q8NDA2 5059 aa3.07□□□□□ -1.92
SYNPO-202ENST00000394243 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
SYNPO-202ENST00000394243 KRTAP9-4Q9BYQ2 154 aa3.06□□□□□ -1.92
SYNPO-202ENST00000394243 UBR4Q5T4S7 5183 aa3.02□□□□□ -1.93
SYNPO-202ENST00000394243 KRTAP2-2Q9BYT5 123 aa2.99□□□□□ -1.93
SYNPO-202ENST00000394243 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.98□□□□□ -1.93
SYNPO-202ENST00000394243 KRTAP9-9Q9BYP9 154 aa2.96□□□□□ -1.93
SYNPO-202ENST00000394243 FAT4Q6V0I7 4981 aa2.94□□□□□ -1.94
SYNPO-202ENST00000394243 RNF213Q63HN8 5207 aa2.93□□□□□ -1.94
SYNPO-202ENST00000394243 KRTAP20-2Q3LI61 65 aa2.91□□□□□ -1.94
SYNPO-202ENST00000394243 KRTAP6-3Q3LI67 103 aa2.88□□□□□ -1.95
SYNPO-202ENST00000394243 KRTAP4-11Q9BYQ6 195 aa2.82□□□□□ -1.96
SYNPO-202ENST00000394243 KMT2DO14686 5537 aa2.76□□□□□ -1.97
SYNPO-202ENST00000394243 FCGBPQ9Y6R7 5405 aaPredicted RBP2.71□□□□□ -1.98
SYNPO-202ENST00000394243 KRTAP4-6Q9BYQ5 205 aa2.68□□□□□ -1.98
SYNPO-202ENST00000394243 DSTQ03001 7570 aaKnown RBP2.66□□□□□ -1.98
SYNPO-202ENST00000394243 KRTAP4-12Q9BQ66 201 aa2.62□□□□□ -1.99
SYNPO-202ENST00000394243 KRTAP4-2Q9BYR5 136 aa2.62□□□□□ -1.99
SYNPO-202ENST00000394243 USH2AO75445 5202 aa2.61□□□□□ -1.99
SYNPO-202ENST00000394243 KRTAP4-4Q9BYR3 166 aa2.59□□□□□ -1.99
SYNPO-202ENST00000394243 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
SYNPO-202ENST00000394243 KRTAP5-5Q701N2 237 aaPredicted RBP2.48□□□□□ -2.01
SYNPO-202ENST00000394243 MACF1Q9UPN3 7388 aaKnown RBP2.42□□□□□ -2.02
SYNPO-202ENST00000394243 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
SYNPO-202ENST00000394243 MUC12Q9UKN1 5478 aa2.29□□□□□ -2.04
SYNPO-202ENST00000394243 KRTAP5-9P26371 169 aa2.27□□□□□ -2.05
SYNPO-202ENST00000394243 NEBP20929 6669 aa2.26□□□□□ -2.05
SYNPO-202ENST00000394243 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
SYNPO-202ENST00000394243 GPR98Q8WXG9 6306 aa2.11□□□□□ -2.07
SYNPO-202ENST00000394243 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
SYNPO-202ENST00000394243 KRTAP5-4Q6L8H1 288 aa2.08□□□□□ -2.08
SYNPO-202ENST00000394243 KRTAP5-3Q6L8H2 238 aa1.9□□□□□ -2.11
SYNPO-202ENST00000394243 KRTAP5-10Q6L8G5 202 aa1.89□□□□□ -2.11
SYNPO-202ENST00000394243 MUC5ACP98088 5654 aa1.89□□□□□ -2.11
SYNPO-202ENST00000394243 KRTAP5-2Q701N4 177 aa1.84□□□□□ -2.12
SYNPO-202ENST00000394243 AHNAK2Q8IVF2 5795 aa1.8□□□□□ -2.12
SYNPO-202ENST00000394243 HMCN1Q96RW7 5635 aa1.74□□□□□ -2.13
SYNPO-202ENST00000394243 KRTAP5-8O75690 187 aa1.73□□□□□ -2.13
SYNPO-202ENST00000394243 KRTAP5-1Q6L8H4 278 aa1.63□□□□□ -2.15
SYNPO-202ENST00000394243 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
SYNPO-202ENST00000394243 AHNAKQ09666 5890 aaKnown RBP1.58□□□□□ -2.16
SYNPO-202ENST00000394243 MUC5BQ9HC84 5762 aaPredicted RBP1.55□□□□□ -2.16
SYNPO-202ENST00000394243 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
SYNPO-202ENST00000394243 KRTAP5-11Q6L8G4 156 aa1.5□□□□□ -2.17
SYNPO-202ENST00000394243 KRTAP5-7Q6L8G8 165 aa1.43□□□□□ -2.18
SYNPO-202ENST00000394243 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.27□□□□□ -2.21
SYNPO-202ENST00000394243 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 10.1 ms