RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 KRTAP12-4P60329 112 aa5.38□□□□□ -1.55
SCN3B-202ENST00000392770 MT1MQ8N339 61 aa5.33□□□□□ -1.56
SCN3B-202ENST00000392770 LOC100996750A0A140TA64 210 aa5.24□□□□□ -1.57
SCN3B-202ENST00000392770 KRTAP4-3Q9BYR4 195 aa5.24□□□□□ -1.57
SCN3B-202ENST00000392770 LCE3DQ9BYE3 92 aa5.23□□□□□ -1.57
SCN3B-202ENST00000392770 KRTAP19-7Q3SYF9 63 aa5.21□□□□□ -1.57
SCN3B-202ENST00000392770 UBR4Q5T4S7 5183 aa5.19□□□□□ -1.58
SCN3B-202ENST00000392770 MUC2Q02817 5179 aa5.15□□□□□ -1.59
SCN3B-202ENST00000392770 LCE3EQ5T5B0 92 aa5.12□□□□□ -1.59
SCN3B-202ENST00000392770 KRTAP9-6A0A140TA67 174 aa5.05□□□□□ -1.6
SCN3B-202ENST00000392770 MT4P47944 62 aa5.03□□□□□ -1.6
SCN3B-202ENST00000392770 FSIP2Q5CZC0 6907 aa4.99□□□□□ -1.61
SCN3B-202ENST00000392770 MT3P25713 68 aa4.96□□□□□ -1.62
SCN3B-202ENST00000392770 MT1AP04731 61 aa4.88□□□□□ -1.63
SCN3B-202ENST00000392770 KRTAP2-3P0C7H8 128 aa4.83□□□□□ -1.64
SCN3B-202ENST00000392770 KRTAP2-4Q9BYR9 128 aa4.83□□□□□ -1.64
SCN3B-202ENST00000392770 KRTAP2-1Q9BYU5 128 aa4.83□□□□□ -1.64
SCN3B-202ENST00000392770 LCE1BQ5T7P3 118 aa4.81□□□□□ -1.64
SCN3B-202ENST00000392770 KRTAP6-3Q3LI67 103 aa4.8□□□□□ -1.64
SCN3B-202ENST00000392770 KRTAP9-6A8MVA2 160 aa4.78□□□□□ -1.64
SCN3B-202ENST00000392770 LCE5AQ5TCM9 118 aa4.77□□□□□ -1.65
SCN3B-202ENST00000392770 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
SCN3B-202ENST00000392770 LCE1AQ5T7P2 110 aa4.74□□□□□ -1.65
SCN3B-202ENST00000392770 KRTAP9-7A8MTY7 169 aa4.73□□□□□ -1.65
SCN3B-202ENST00000392770 PRM1P04553 51 aa4.73□□□□□ -1.65
SCN3B-202ENST00000392770 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.72□□□□□ -1.65
SCN3B-202ENST00000392770 LCE1DQ5T752 114 aa4.71□□□□□ -1.65
SCN3B-202ENST00000392770 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
SCN3B-202ENST00000392770 KRTAP20-1Q3LI63 56 aa4.67□□□□□ -1.66
SCN3B-202ENST00000392770 SYNE2Q8WXH0 6885 aaKnown RBP4.66□□□□□ -1.66
SCN3B-202ENST00000392770 USH2AO75445 5202 aa4.58□□□□□ -1.68
SCN3B-202ENST00000392770 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
SCN3B-202ENST00000392770 KRTAP6-2Q3LI66 62 aa4.54□□□□□ -1.68
SCN3B-202ENST00000392770 KMT2DO14686 5537 aa4.48□□□□□ -1.69
SCN3B-202ENST00000392770 LCE4AQ5TA78 99 aa4.47□□□□□ -1.69
SCN3B-202ENST00000392770 KRTAP2-2Q9BYT5 123 aa4.4□□□□□ -1.7
SCN3B-202ENST00000392770 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
SCN3B-202ENST00000392770 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
SCN3B-202ENST00000392770 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
SCN3B-202ENST00000392770 LCE1FQ5T754 118 aa4.3□□□□□ -1.72
SCN3B-202ENST00000392770 KRTAP5-9P26371 169 aa4.3□□□□□ -1.72
SCN3B-202ENST00000392770 MACF1Q9UPN3 7388 aaKnown RBP4.28□□□□□ -1.72
SCN3B-202ENST00000392770 SSPOA2VEC9 5147 aa4.23□□□□□ -1.73
SCN3B-202ENST00000392770 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.74
SCN3B-202ENST00000392770 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
SCN3B-202ENST00000392770 NEBP20929 6669 aa4.04□□□□□ -1.76
SCN3B-202ENST00000392770 KRTAP4-6Q9BYQ5 205 aa3.98□□□□□ -1.77
SCN3B-202ENST00000392770 MUC12Q9UKN1 5478 aa3.96□□□□□ -1.78
SCN3B-202ENST00000392770 DSTQ03001 7570 aaKnown RBP3.93□□□□□ -1.78
SCN3B-202ENST00000392770 KRTAP20-2Q3LI61 65 aa3.9□□□□□ -1.78
SCN3B-202ENST00000392770 KRTAP9-9Q9BYP9 154 aa3.73□□□□□ -1.81
SCN3B-202ENST00000392770 KRTAP5-5Q701N2 237 aaPredicted RBP3.72□□□□□ -1.81
SCN3B-202ENST00000392770 KRTAP5-4Q6L8H1 288 aa3.7□□□□□ -1.82
SCN3B-202ENST00000392770 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
SCN3B-202ENST00000392770 KRTAP4-11Q9BYQ6 195 aa3.51□□□□□ -1.85
SCN3B-202ENST00000392770 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
SCN3B-202ENST00000392770 KRTAP4-4Q9BYR3 166 aa3.33□□□□□ -1.88
SCN3B-202ENST00000392770 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
SCN3B-202ENST00000392770 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
SCN3B-202ENST00000392770 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
SCN3B-202ENST00000392770 KRTAP5-3Q6L8H2 238 aa3.19□□□□□ -1.9
SCN3B-202ENST00000392770 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
SCN3B-202ENST00000392770 KRTAP5-8O75690 187 aa2.94□□□□□ -1.94
SCN3B-202ENST00000392770 MUC5ACP98088 5654 aa2.93□□□□□ -1.94
SCN3B-202ENST00000392770 HMCN1Q96RW7 5635 aa2.87□□□□□ -1.95
SCN3B-202ENST00000392770 KRTAP5-10Q6L8G5 202 aa2.83□□□□□ -1.96
SCN3B-202ENST00000392770 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
SCN3B-202ENST00000392770 KRTAP5-1Q6L8H4 278 aa2.68□□□□□ -1.98
SCN3B-202ENST00000392770 KRTAP5-11Q6L8G4 156 aa2.58□□□□□ -2
SCN3B-202ENST00000392770 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
SCN3B-202ENST00000392770 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
SCN3B-202ENST00000392770 PHGR1C9JFL3 82 aa2.5□□□□□ -2.01
SCN3B-202ENST00000392770 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
SCN3B-202ENST00000392770 AHNAKQ09666 5890 aaKnown RBP2.26□□□□□ -2.05
SCN3B-202ENST00000392770 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
SCN3B-202ENST00000392770 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
SCN3B-202ENST00000392770 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 109.1 ms