RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 KMT2CQ8NEZ4 4911 aaKnown RBP4.09□□□□□ -1.75
COL4A1-201ENST00000375820 KRTAP9-2Q9BYQ4 174 aa4.09□□□□□ -1.76
COL4A1-201ENST00000375820 FLGP20930 4061 aaPredicted RBP4.06□□□□□ -1.76
COL4A1-201ENST00000375820 KRTAP19-2Q3LHN2 52 aa4.04□□□□□ -1.76
COL4A1-201ENST00000375820 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
COL4A1-201ENST00000375820 LCE5AQ5TCM9 118 aa4.03□□□□□ -1.76
COL4A1-201ENST00000375820 EPPK1P58107 5090 aaKnown RBP3.99□□□□□ -1.77
COL4A1-201ENST00000375820 KRTAP19-6Q3LI70 58 aa3.98□□□□□ -1.77
COL4A1-201ENST00000375820 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
COL4A1-201ENST00000375820 SYNE1Q8NF91 8797 aaKnown RBP3.92□□□□□ -1.78
COL4A1-201ENST00000375820 MUC17Q685J3 4493 aa3.89□□□□□ -1.79
COL4A1-201ENST00000375820 KRTAP2-3P0C7H8 128 aa3.87□□□□□ -1.79
COL4A1-201ENST00000375820 KRTAP2-4Q9BYR9 128 aa3.87□□□□□ -1.79
COL4A1-201ENST00000375820 KRTAP2-1Q9BYU5 128 aa3.87□□□□□ -1.79
COL4A1-201ENST00000375820 MT1AP04731 61 aa3.84□□□□□ -1.79
COL4A1-201ENST00000375820 KRTAP19-7Q3SYF9 63 aa3.84□□□□□ -1.79
COL4A1-201ENST00000375820 KRTAP9-6A0A140TA67 174 aa3.82□□□□□ -1.8
COL4A1-201ENST00000375820 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
COL4A1-201ENST00000375820 KRTAP6-2Q3LI66 62 aa3.77□□□□□ -1.81
COL4A1-201ENST00000375820 LCE1CQ5T751 118 aa3.76□□□□□ -1.81
COL4A1-201ENST00000375820 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
COL4A1-201ENST00000375820 LCE1FQ5T754 118 aa3.76□□□□□ -1.81
COL4A1-201ENST00000375820 LCE1AQ5T7P2 110 aa3.76□□□□□ -1.81
COL4A1-201ENST00000375820 ABCA13Q86UQ4 5058 aa3.75□□□□□ -1.81
COL4A1-201ENST00000375820 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
COL4A1-201ENST00000375820 HMCN2Q8NDA2 5059 aa3.72□□□□□ -1.81
COL4A1-201ENST00000375820 MUC2Q02817 5179 aa3.67□□□□□ -1.82
COL4A1-201ENST00000375820 KRTAP9-7A8MTY7 169 aa3.66□□□□□ -1.82
COL4A1-201ENST00000375820 LCE2AQ5TA79 106 aaPredicted RBP3.65□□□□□ -1.83
COL4A1-201ENST00000375820 FAT4Q6V0I7 4981 aa3.63□□□□□ -1.83
COL4A1-201ENST00000375820 UBR4Q5T4S7 5183 aa3.62□□□□□ -1.83
COL4A1-201ENST00000375820 KRTAP9-6A8MVA2 160 aa3.61□□□□□ -1.83
COL4A1-201ENST00000375820 KRTAP9-4Q9BYQ2 154 aa3.6□□□□□ -1.83
COL4A1-201ENST00000375820 RNF213Q63HN8 5207 aa3.59□□□□□ -1.83
COL4A1-201ENST00000375820 OBSCNQ5VST9 7968 aa3.57□□□□□ -1.84
COL4A1-201ENST00000375820 KRTAP6-3Q3LI67 103 aa3.47□□□□□ -1.85
COL4A1-201ENST00000375820 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.46□□□□□ -1.86
COL4A1-201ENST00000375820 LCE4AQ5TA78 99 aa3.44□□□□□ -1.86
COL4A1-201ENST00000375820 KRTAP2-2Q9BYT5 123 aa3.39□□□□□ -1.87
COL4A1-201ENST00000375820 KRTAP4-11Q9BYQ6 195 aa3.26□□□□□ -1.89
COL4A1-201ENST00000375820 FCGBPQ9Y6R7 5405 aaPredicted RBP3.24□□□□□ -1.89
COL4A1-201ENST00000375820 KRTAP9-9Q9BYP9 154 aa3.22□□□□□ -1.89
COL4A1-201ENST00000375820 KMT2DO14686 5537 aa3.22□□□□□ -1.89
COL4A1-201ENST00000375820 DSTQ03001 7570 aaKnown RBP3.19□□□□□ -1.9
COL4A1-201ENST00000375820 USH2AO75445 5202 aa3.15□□□□□ -1.91
COL4A1-201ENST00000375820 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
COL4A1-201ENST00000375820 KRTAP20-2Q3LI61 65 aa3.1□□□□□ -1.91
COL4A1-201ENST00000375820 KRTAP4-6Q9BYQ5 205 aa3.1□□□□□ -1.91
COL4A1-201ENST00000375820 MACF1Q9UPN3 7388 aaKnown RBP3.04□□□□□ -1.92
COL4A1-201ENST00000375820 KRTAP4-12Q9BQ66 201 aa3.03□□□□□ -1.92
COL4A1-201ENST00000375820 KRTAP4-2Q9BYR5 136 aa3.03□□□□□ -1.92
COL4A1-201ENST00000375820 SSPOA2VEC9 5147 aa2.97□□□□□ -1.93
COL4A1-201ENST00000375820 NEBP20929 6669 aa2.9□□□□□ -1.94
COL4A1-201ENST00000375820 MUC19Q7Z5P9 8384 aa2.89□□□□□ -1.95
COL4A1-201ENST00000375820 KRTAP5-9P26371 169 aa2.84□□□□□ -1.95
COL4A1-201ENST00000375820 MUC12Q9UKN1 5478 aa2.74□□□□□ -1.97
COL4A1-201ENST00000375820 MDN1Q9NU22 5596 aa2.71□□□□□ -1.98
COL4A1-201ENST00000375820 GPR98Q8WXG9 6306 aa2.67□□□□□ -1.98
COL4A1-201ENST00000375820 KRTAP5-5Q701N2 237 aaPredicted RBP2.66□□□□□ -1.98
COL4A1-201ENST00000375820 KRTAP5-4Q6L8H1 288 aa2.59□□□□□ -1.99
COL4A1-201ENST00000375820 MUC5ACP98088 5654 aa2.34□□□□□ -2.04
COL4A1-201ENST00000375820 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
COL4A1-201ENST00000375820 HMCN1Q96RW7 5635 aa2.2□□□□□ -2.06
COL4A1-201ENST00000375820 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
COL4A1-201ENST00000375820 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
COL4A1-201ENST00000375820 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
COL4A1-201ENST00000375820 KRTAP5-10Q6L8G5 202 aa2.06□□□□□ -2.08
COL4A1-201ENST00000375820 KRTAP5-2Q701N4 177 aa2.05□□□□□ -2.08
COL4A1-201ENST00000375820 KRTAP5-1Q6L8H4 278 aa1.9□□□□□ -2.11
COL4A1-201ENST00000375820 MUC5BQ9HC84 5762 aaPredicted RBP1.9□□□□□ -2.11
COL4A1-201ENST00000375820 KRTAP5-11Q6L8G4 156 aa1.82□□□□□ -2.12
COL4A1-201ENST00000375820 AHNAKQ09666 5890 aaKnown RBP1.81□□□□□ -2.12
COL4A1-201ENST00000375820 KRTAP21-2Q3LI59 83 aa1.71□□□□□ -2.14
COL4A1-201ENST00000375820 KRTAP21-1Q3LI58 79 aa1.62□□□□□ -2.15
COL4A1-201ENST00000375820 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
COL4A1-201ENST00000375820 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.51□□□□□ -2.17
COL4A1-201ENST00000375820 MUC16Q8WXI7 14507 aa1.22□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 112.8 ms