RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 MT1MQ8N339 61 aa2.06□□□□□ -2.08
SMC1A-202ENST00000375340 RNF213Q63HN8 5207 aa2.05□□□□□ -2.08
SMC1A-202ENST00000375340 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
SMC1A-202ENST00000375340 KRTAP19-7Q3SYF9 63 aa2.04□□□□□ -2.08
SMC1A-202ENST00000375340 KRTAP9-6A8MVA2 160 aa2.03□□□□□ -2.08
SMC1A-202ENST00000375340 KRTAP4-9Q9BYQ8 210 aa2.03□□□□□ -2.09
SMC1A-202ENST00000375340 FAT4Q6V0I7 4981 aa2.02□□□□□ -2.09
SMC1A-202ENST00000375340 KRTAP2-3P0C7H8 128 aa2.01□□□□□ -2.09
SMC1A-202ENST00000375340 KRTAP2-4Q9BYR9 128 aa2.01□□□□□ -2.09
SMC1A-202ENST00000375340 KRTAP2-1Q9BYU5 128 aa2.01□□□□□ -2.09
SMC1A-202ENST00000375340 LCE3EQ5T5B0 92 aa2□□□□□ -2.09
SMC1A-202ENST00000375340 PRM1P04553 51 aa1.99□□□□□ -2.09
SMC1A-202ENST00000375340 KRTAP19-6Q3LI70 58 aa1.97□□□□□ -2.09
SMC1A-202ENST00000375340 LCE2AQ5TA79 106 aaPredicted RBP1.95□□□□□ -2.1
SMC1A-202ENST00000375340 UBR4Q5T4S7 5183 aa1.94□□□□□ -2.1
SMC1A-202ENST00000375340 KMT2DO14686 5537 aa1.91□□□□□ -2.1
SMC1A-202ENST00000375340 MT4P47944 62 aa1.89□□□□□ -2.11
SMC1A-202ENST00000375340 KRTAP6-1Q3LI64 71 aa1.87□□□□□ -2.11
SMC1A-202ENST00000375340 MT1AP04731 61 aa1.84□□□□□ -2.11
SMC1A-202ENST00000375340 KRTAP9-7A8MTY7 169 aa1.84□□□□□ -2.12
SMC1A-202ENST00000375340 KRTAP9-2Q9BYQ4 174 aa1.83□□□□□ -2.12
SMC1A-202ENST00000375340 SYNE2Q8WXH0 6885 aaKnown RBP1.82□□□□□ -2.12
SMC1A-202ENST00000375340 KRTAP6-2Q3LI66 62 aa1.81□□□□□ -2.12
SMC1A-202ENST00000375340 LCE5AQ5TCM9 118 aa1.8□□□□□ -2.12
SMC1A-202ENST00000375340 LCE1DQ5T752 114 aa1.77□□□□□ -2.13
SMC1A-202ENST00000375340 LCE1BQ5T7P3 118 aa1.76□□□□□ -2.13
SMC1A-202ENST00000375340 KRTAP9-4Q9BYQ2 154 aa1.75□□□□□ -2.13
SMC1A-202ENST00000375340 USH2AO75445 5202 aa1.74□□□□□ -2.13
SMC1A-202ENST00000375340 FSIP2Q5CZC0 6907 aa1.74□□□□□ -2.13
SMC1A-202ENST00000375340 LCE1AQ5T7P2 110 aa1.71□□□□□ -2.14
SMC1A-202ENST00000375340 KRTAP9-6A0A140TA67 174 aa1.68□□□□□ -2.14
SMC1A-202ENST00000375340 SSPOA2VEC9 5147 aa1.66□□□□□ -2.14
SMC1A-202ENST00000375340 KRTAP20-1Q3LI63 56 aa1.65□□□□□ -2.15
SMC1A-202ENST00000375340 KRTAP2-2Q9BYT5 123 aa1.62□□□□□ -2.15
SMC1A-202ENST00000375340 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.6□□□□□ -2.15
SMC1A-202ENST00000375340 KRTAP6-3Q3LI67 103 aa1.59□□□□□ -2.15
SMC1A-202ENST00000375340 KRTAP5-5Q701N2 237 aaPredicted RBP1.57□□□□□ -2.16
SMC1A-202ENST00000375340 FCGBPQ9Y6R7 5405 aaPredicted RBP1.57□□□□□ -2.16
SMC1A-202ENST00000375340 DSTQ03001 7570 aaKnown RBP1.57□□□□□ -2.16
SMC1A-202ENST00000375340 LCE4AQ5TA78 99 aa1.52□□□□□ -2.17
SMC1A-202ENST00000375340 MUC12Q9UKN1 5478 aa1.52□□□□□ -2.17
SMC1A-202ENST00000375340 KRTAP4-6Q9BYQ5 205 aa1.52□□□□□ -2.17
SMC1A-202ENST00000375340 SYNE1Q8NF91 8797 aaKnown RBP1.51□□□□□ -2.17
SMC1A-202ENST00000375340 KRTAP4-11Q9BYQ6 195 aa1.5□□□□□ -2.17
SMC1A-202ENST00000375340 KRTAP5-9P26371 169 aa1.5□□□□□ -2.17
SMC1A-202ENST00000375340 LCE1CQ5T751 118 aa1.49□□□□□ -2.17
SMC1A-202ENST00000375340 LCE1EQ5T753 118 aa1.49□□□□□ -2.17
SMC1A-202ENST00000375340 LCE1FQ5T754 118 aa1.49□□□□□ -2.17
SMC1A-202ENST00000375340 OBSCNQ5VST9 7968 aa1.47□□□□□ -2.17
SMC1A-202ENST00000375340 MACF1Q9UPN3 7388 aaKnown RBP1.44□□□□□ -2.18
SMC1A-202ENST00000375340 KRTAP20-2Q3LI61 65 aa1.43□□□□□ -2.18
SMC1A-202ENST00000375340 MDN1Q9NU22 5596 aa1.43□□□□□ -2.18
SMC1A-202ENST00000375340 KRTAP4-4Q9BYR3 166 aa1.38□□□□□ -2.19
SMC1A-202ENST00000375340 KRTAP9-9Q9BYP9 154 aa1.38□□□□□ -2.19
SMC1A-202ENST00000375340 KRTAP5-4Q6L8H1 288 aa1.37□□□□□ -2.19
SMC1A-202ENST00000375340 NEBP20929 6669 aa1.36□□□□□ -2.19
SMC1A-202ENST00000375340 KRTAP4-12Q9BQ66 201 aa1.3□□□□□ -2.2
SMC1A-202ENST00000375340 KRTAP4-2Q9BYR5 136 aa1.3□□□□□ -2.2
SMC1A-202ENST00000375340 GPR98Q8WXG9 6306 aa1.22□□□□□ -2.21
SMC1A-202ENST00000375340 HMCN1Q96RW7 5635 aa1.17□□□□□ -2.22
SMC1A-202ENST00000375340 MUC19Q7Z5P9 8384 aa1.15□□□□□ -2.23
SMC1A-202ENST00000375340 MUC5BQ9HC84 5762 aaPredicted RBP1.15□□□□□ -2.23
SMC1A-202ENST00000375340 KRTAP5-10Q6L8G5 202 aa1.15□□□□□ -2.23
SMC1A-202ENST00000375340 KRTAP5-2Q701N4 177 aa1.14□□□□□ -2.23
SMC1A-202ENST00000375340 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
SMC1A-202ENST00000375340 KRTAP5-3Q6L8H2 238 aa1.12□□□□□ -2.23
SMC1A-202ENST00000375340 MUC5ACP98088 5654 aa1.07□□□□□ -2.24
SMC1A-202ENST00000375340 KRTAP5-8O75690 187 aa1.04□□□□□ -2.24
SMC1A-202ENST00000375340 KRTAP5-1Q6L8H4 278 aa1.04□□□□□ -2.24
SMC1A-202ENST00000375340 KRTAP21-2Q3LI59 83 aa1.01□□□□□ -2.25
SMC1A-202ENST00000375340 AHNAKQ09666 5890 aaKnown RBP1.01□□□□□ -2.25
SMC1A-202ENST00000375340 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
SMC1A-202ENST00000375340 KRTAP5-11Q6L8G4 156 aa0.93□□□□□ -2.26
SMC1A-202ENST00000375340 KRTAP5-7Q6L8G8 165 aa0.93□□□□□ -2.26
SMC1A-202ENST00000375340 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.92□□□□□ -2.26
SMC1A-202ENST00000375340 PHGR1C9JFL3 82 aa0.91□□□□□ -2.26
SMC1A-202ENST00000375340 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 63.3 ms