RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 KRTAP9-6A0A140TA67 174 aa4.54□□□□□ -1.68
TRAF1-201ENST00000373887 FSIP2Q5CZC0 6907 aa4.53□□□□□ -1.68
TRAF1-201ENST00000373887 KRTAP4-3Q9BYR4 195 aa4.53□□□□□ -1.68
TRAF1-201ENST00000373887 KRTAP19-6Q3LI70 58 aa4.51□□□□□ -1.69
TRAF1-201ENST00000373887 ABCA13Q86UQ4 5058 aa4.49□□□□□ -1.69
TRAF1-201ENST00000373887 LCE1BQ5T7P3 118 aa4.48□□□□□ -1.69
TRAF1-201ENST00000373887 MT1MQ8N339 61 aa4.48□□□□□ -1.69
TRAF1-201ENST00000373887 LCE1DQ5T752 114 aa4.41□□□□□ -1.7
TRAF1-201ENST00000373887 LCE2AQ5TA79 106 aaPredicted RBP4.39□□□□□ -1.71
TRAF1-201ENST00000373887 MT3P25713 68 aa4.39□□□□□ -1.71
TRAF1-201ENST00000373887 FAT4Q6V0I7 4981 aa4.38□□□□□ -1.71
TRAF1-201ENST00000373887 SYNE2Q8WXH0 6885 aaKnown RBP4.28□□□□□ -1.72
TRAF1-201ENST00000373887 KRTAP20-1Q3LI63 56 aa4.28□□□□□ -1.72
TRAF1-201ENST00000373887 KRTAP9-7A8MTY7 169 aa4.28□□□□□ -1.72
TRAF1-201ENST00000373887 HMCN2Q8NDA2 5059 aa4.26□□□□□ -1.73
TRAF1-201ENST00000373887 RNF213Q63HN8 5207 aa4.26□□□□□ -1.73
TRAF1-201ENST00000373887 UBR4Q5T4S7 5183 aa4.25□□□□□ -1.73
TRAF1-201ENST00000373887 KRTAP4-9Q9BYQ8 210 aa4.19□□□□□ -1.74
TRAF1-201ENST00000373887 LCE5AQ5TCM9 118 aa4.18□□□□□ -1.74
TRAF1-201ENST00000373887 KRTAP19-7Q3SYF9 63 aa4.18□□□□□ -1.74
TRAF1-201ENST00000373887 MUC2Q02817 5179 aa4.16□□□□□ -1.74
TRAF1-201ENST00000373887 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.1□□□□□ -1.75
TRAF1-201ENST00000373887 MT1AP04731 61 aa4.06□□□□□ -1.76
TRAF1-201ENST00000373887 KRTAP6-3Q3LI67 103 aa4.05□□□□□ -1.76
TRAF1-201ENST00000373887 KRTAP2-3P0C7H8 128 aa4.01□□□□□ -1.77
TRAF1-201ENST00000373887 KRTAP2-4Q9BYR9 128 aa4.01□□□□□ -1.77
TRAF1-201ENST00000373887 KRTAP2-1Q9BYU5 128 aa4□□□□□ -1.77
TRAF1-201ENST00000373887 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
TRAF1-201ENST00000373887 KRTAP6-1Q3LI64 71 aa3.94□□□□□ -1.78
TRAF1-201ENST00000373887 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
TRAF1-201ENST00000373887 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
TRAF1-201ENST00000373887 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
TRAF1-201ENST00000373887 LCE1AQ5T7P2 110 aa3.92□□□□□ -1.78
TRAF1-201ENST00000373887 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
TRAF1-201ENST00000373887 KRTAP2-2Q9BYT5 123 aa3.87□□□□□ -1.79
TRAF1-201ENST00000373887 KRTAP9-4Q9BYQ2 154 aa3.82□□□□□ -1.8
TRAF1-201ENST00000373887 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
TRAF1-201ENST00000373887 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
TRAF1-201ENST00000373887 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
TRAF1-201ENST00000373887 KMT2DO14686 5537 aa3.64□□□□□ -1.83
TRAF1-201ENST00000373887 USH2AO75445 5202 aa3.59□□□□□ -1.83
TRAF1-201ENST00000373887 MACF1Q9UPN3 7388 aaKnown RBP3.58□□□□□ -1.84
TRAF1-201ENST00000373887 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
TRAF1-201ENST00000373887 DSTQ03001 7570 aaKnown RBP3.51□□□□□ -1.85
TRAF1-201ENST00000373887 KRTAP9-9Q9BYP9 154 aa3.47□□□□□ -1.85
TRAF1-201ENST00000373887 KRTAP4-6Q9BYQ5 205 aa3.44□□□□□ -1.86
TRAF1-201ENST00000373887 NEBP20929 6669 aa3.44□□□□□ -1.86
TRAF1-201ENST00000373887 SSPOA2VEC9 5147 aa3.38□□□□□ -1.87
TRAF1-201ENST00000373887 KRTAP4-11Q9BYQ6 195 aa3.37□□□□□ -1.87
TRAF1-201ENST00000373887 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
TRAF1-201ENST00000373887 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
TRAF1-201ENST00000373887 MUC12Q9UKN1 5478 aa3.23□□□□□ -1.89
TRAF1-201ENST00000373887 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
TRAF1-201ENST00000373887 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
TRAF1-201ENST00000373887 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
TRAF1-201ENST00000373887 MDN1Q9NU22 5596 aa3.01□□□□□ -1.93
TRAF1-201ENST00000373887 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
TRAF1-201ENST00000373887 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
TRAF1-201ENST00000373887 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
TRAF1-201ENST00000373887 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
TRAF1-201ENST00000373887 KRTAP5-3Q6L8H2 238 aa2.7□□□□□ -1.98
TRAF1-201ENST00000373887 MUC5ACP98088 5654 aa2.61□□□□□ -1.99
TRAF1-201ENST00000373887 KRTAP5-8O75690 187 aa2.53□□□□□ -2.01
TRAF1-201ENST00000373887 HMCN1Q96RW7 5635 aa2.4□□□□□ -2.03
TRAF1-201ENST00000373887 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
TRAF1-201ENST00000373887 AHNAK2Q8IVF2 5795 aa2.25□□□□□ -2.05
TRAF1-201ENST00000373887 KRTAP5-2Q701N4 177 aa2.21□□□□□ -2.06
TRAF1-201ENST00000373887 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
TRAF1-201ENST00000373887 MUC5BQ9HC84 5762 aaPredicted RBP2.11□□□□□ -2.07
TRAF1-201ENST00000373887 KRTAP5-1Q6L8H4 278 aa2.05□□□□□ -2.08
TRAF1-201ENST00000373887 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
TRAF1-201ENST00000373887 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
TRAF1-201ENST00000373887 KRTAP21-2Q3LI59 83 aa1.92□□□□□ -2.1
TRAF1-201ENST00000373887 KRTAP5-7Q6L8G8 165 aa1.74□□□□□ -2.13
TRAF1-201ENST00000373887 KRTAP21-1Q3LI58 79 aa1.7□□□□□ -2.14
TRAF1-201ENST00000373887 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.69□□□□□ -2.14
TRAF1-201ENST00000373887 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 36.3 ms