RNA–Protein interactions for RNA: ENST00000372189.7

RAPGEF1-201, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,085 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-201ENST00000372189 ABCA13Q86UQ4 5058 aa4.33□□□□□ -1.72
RAPGEF1-201ENST00000372189 KRTAP9-6A0A140TA67 174 aa4.32□□□□□ -1.72
RAPGEF1-201ENST00000372189 KRTAP4-7Q9BYR0 210 aa4.26□□□□□ -1.73
RAPGEF1-201ENST00000372189 MT1MQ8N339 61 aa4.22□□□□□ -1.73
RAPGEF1-201ENST00000372189 MT4P47944 62 aa4.19□□□□□ -1.74
RAPGEF1-201ENST00000372189 FAT4Q6V0I7 4981 aa4.17□□□□□ -1.74
RAPGEF1-201ENST00000372189 RNF213Q63HN8 5207 aa4.12□□□□□ -1.75
RAPGEF1-201ENST00000372189 KRTAP4-3Q9BYR4 195 aa4.06□□□□□ -1.76
RAPGEF1-201ENST00000372189 LOC100996750A0A140TA64 210 aa4.05□□□□□ -1.76
RAPGEF1-201ENST00000372189 KRTAP9-7A8MTY7 169 aa4.03□□□□□ -1.76
RAPGEF1-201ENST00000372189 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
RAPGEF1-201ENST00000372189 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
RAPGEF1-201ENST00000372189 UBR4Q5T4S7 5183 aa4□□□□□ -1.77
RAPGEF1-201ENST00000372189 HMCN2Q8NDA2 5059 aa3.99□□□□□ -1.77
RAPGEF1-201ENST00000372189 KRTAP6-3Q3LI67 103 aa3.99□□□□□ -1.77
RAPGEF1-201ENST00000372189 FSIP2Q5CZC0 6907 aa3.93□□□□□ -1.78
RAPGEF1-201ENST00000372189 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.91□□□□□ -1.78
RAPGEF1-201ENST00000372189 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
RAPGEF1-201ENST00000372189 MT1AP04731 61 aa3.89□□□□□ -1.79
RAPGEF1-201ENST00000372189 KRTAP2-3P0C7H8 128 aa3.88□□□□□ -1.79
RAPGEF1-201ENST00000372189 KRTAP2-4Q9BYR9 128 aa3.88□□□□□ -1.79
RAPGEF1-201ENST00000372189 KRTAP2-1Q9BYU5 128 aa3.88□□□□□ -1.79
RAPGEF1-201ENST00000372189 LCE1DQ5T752 114 aa3.86□□□□□ -1.79
RAPGEF1-201ENST00000372189 LCE1BQ5T7P3 118 aa3.86□□□□□ -1.79
RAPGEF1-201ENST00000372189 SYNE2Q8WXH0 6885 aaKnown RBP3.8□□□□□ -1.8
RAPGEF1-201ENST00000372189 MUC2Q02817 5179 aa3.75□□□□□ -1.81
RAPGEF1-201ENST00000372189 LCE4AQ5TA78 99 aa3.74□□□□□ -1.81
RAPGEF1-201ENST00000372189 KRTAP2-2Q9BYT5 123 aa3.73□□□□□ -1.81
RAPGEF1-201ENST00000372189 LCE5AQ5TCM9 118 aa3.73□□□□□ -1.81
RAPGEF1-201ENST00000372189 KRTAP4-9Q9BYQ8 210 aa3.71□□□□□ -1.82
RAPGEF1-201ENST00000372189 SYNE1Q8NF91 8797 aaKnown RBP3.69□□□□□ -1.82
RAPGEF1-201ENST00000372189 KRTAP6-1Q3LI64 71 aa3.64□□□□□ -1.83
RAPGEF1-201ENST00000372189 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
RAPGEF1-201ENST00000372189 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
RAPGEF1-201ENST00000372189 KRTAP9-6A8MVA2 160 aa3.6□□□□□ -1.83
RAPGEF1-201ENST00000372189 USH2AO75445 5202 aa3.42□□□□□ -1.86
RAPGEF1-201ENST00000372189 KRTAP5-9P26371 169 aa3.39□□□□□ -1.87
RAPGEF1-201ENST00000372189 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
RAPGEF1-201ENST00000372189 FCGBPQ9Y6R7 5405 aaPredicted RBP3.3□□□□□ -1.88
RAPGEF1-201ENST00000372189 MACF1Q9UPN3 7388 aaKnown RBP3.3□□□□□ -1.88
RAPGEF1-201ENST00000372189 LCE1CQ5T751 118 aa3.3□□□□□ -1.88
RAPGEF1-201ENST00000372189 LCE1EQ5T753 118 aa3.3□□□□□ -1.88
RAPGEF1-201ENST00000372189 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
RAPGEF1-201ENST00000372189 NEBP20929 6669 aa3.29□□□□□ -1.88
RAPGEF1-201ENST00000372189 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
RAPGEF1-201ENST00000372189 KRTAP9-9Q9BYP9 154 aa3.23□□□□□ -1.89
RAPGEF1-201ENST00000372189 DSTQ03001 7570 aaKnown RBP3.22□□□□□ -1.89
RAPGEF1-201ENST00000372189 KMT2DO14686 5537 aa3.22□□□□□ -1.89
RAPGEF1-201ENST00000372189 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
RAPGEF1-201ENST00000372189 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
RAPGEF1-201ENST00000372189 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
RAPGEF1-201ENST00000372189 KRTAP5-4Q6L8H1 288 aa2.98□□□□□ -1.93
RAPGEF1-201ENST00000372189 MUC12Q9UKN1 5478 aa2.92□□□□□ -1.94
RAPGEF1-201ENST00000372189 MDN1Q9NU22 5596 aa2.81□□□□□ -1.96
RAPGEF1-201ENST00000372189 GPR98Q8WXG9 6306 aa2.79□□□□□ -1.96
RAPGEF1-201ENST00000372189 KRTAP5-5Q701N2 237 aaPredicted RBP2.77□□□□□ -1.97
RAPGEF1-201ENST00000372189 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
RAPGEF1-201ENST00000372189 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
RAPGEF1-201ENST00000372189 KRTAP4-2Q9BYR5 136 aa2.73□□□□□ -1.97
RAPGEF1-201ENST00000372189 KRTAP4-4Q9BYR3 166 aa2.68□□□□□ -1.98
RAPGEF1-201ENST00000372189 KRTAP5-3Q6L8H2 238 aa2.61□□□□□ -1.99
RAPGEF1-201ENST00000372189 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
RAPGEF1-201ENST00000372189 MUC5ACP98088 5654 aa2.34□□□□□ -2.03
RAPGEF1-201ENST00000372189 KRTAP5-2Q701N4 177 aa2.31□□□□□ -2.04
RAPGEF1-201ENST00000372189 HMCN1Q96RW7 5635 aa2.29□□□□□ -2.04
RAPGEF1-201ENST00000372189 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
RAPGEF1-201ENST00000372189 KRTAP5-10Q6L8G5 202 aa2.16□□□□□ -2.06
RAPGEF1-201ENST00000372189 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
RAPGEF1-201ENST00000372189 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
RAPGEF1-201ENST00000372189 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
RAPGEF1-201ENST00000372189 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.08
RAPGEF1-201ENST00000372189 AHNAKQ09666 5890 aaKnown RBP1.92□□□□□ -2.1
RAPGEF1-201ENST00000372189 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
RAPGEF1-201ENST00000372189 KRTAP21-2Q3LI59 83 aa1.88□□□□□ -2.11
RAPGEF1-201ENST00000372189 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
RAPGEF1-201ENST00000372189 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.79□□□□□ -2.12
RAPGEF1-201ENST00000372189 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 6 ms