RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 KRTAP4-3Q9BYR4 195 aa4.37□□□□□ -1.71
GTF3C4-201ENST00000372146 LCE5AQ5TCM9 118 aa4.32□□□□□ -1.72
GTF3C4-201ENST00000372146 KRTAP6-2Q3LI66 62 aa4.31□□□□□ -1.72
GTF3C4-201ENST00000372146 KRTAP2-3P0C7H8 128 aa4.3□□□□□ -1.72
GTF3C4-201ENST00000372146 KRTAP2-4Q9BYR9 128 aa4.3□□□□□ -1.72
GTF3C4-201ENST00000372146 KRTAP2-1Q9BYU5 128 aa4.3□□□□□ -1.72
GTF3C4-201ENST00000372146 PCLOQ9Y6V0 5065 aa4.28□□□□□ -1.72
GTF3C4-201ENST00000372146 SYNE2Q8WXH0 6885 aaKnown RBP4.22□□□□□ -1.73
GTF3C4-201ENST00000372146 KRTAP19-6Q3LI70 58 aa4.21□□□□□ -1.74
GTF3C4-201ENST00000372146 HERC1Q15751 4861 aa4.2□□□□□ -1.74
GTF3C4-201ENST00000372146 MT1AP04731 61 aa4.18□□□□□ -1.74
GTF3C4-201ENST00000372146 LCE1CQ5T751 118 aa4.13□□□□□ -1.75
GTF3C4-201ENST00000372146 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
GTF3C4-201ENST00000372146 LCE1FQ5T754 118 aa4.13□□□□□ -1.75
GTF3C4-201ENST00000372146 LCE1AQ5T7P2 110 aa4.13□□□□□ -1.75
GTF3C4-201ENST00000372146 LCE4AQ5TA78 99 aa4.13□□□□□ -1.75
GTF3C4-201ENST00000372146 KRTAP9-7A8MTY7 169 aa4.12□□□□□ -1.75
GTF3C4-201ENST00000372146 KRTAP9-2Q9BYQ4 174 aa4.1□□□□□ -1.75
GTF3C4-201ENST00000372146 HMCN2Q8NDA2 5059 aa4.1□□□□□ -1.75
GTF3C4-201ENST00000372146 KRTAP19-7Q3SYF9 63 aa4.1□□□□□ -1.75
GTF3C4-201ENST00000372146 BIRC6Q9NR09 4857 aa4.06□□□□□ -1.76
GTF3C4-201ENST00000372146 LCE2AQ5TA79 106 aaPredicted RBP4.02□□□□□ -1.77
GTF3C4-201ENST00000372146 KRTAP6-1Q3LI64 71 aa3.93□□□□□ -1.78
GTF3C4-201ENST00000372146 EPPK1P58107 5090 aaKnown RBP3.92□□□□□ -1.78
GTF3C4-201ENST00000372146 FSIP2Q5CZC0 6907 aa3.91□□□□□ -1.78
GTF3C4-201ENST00000372146 KRTAP2-2Q9BYT5 123 aa3.89□□□□□ -1.79
GTF3C4-201ENST00000372146 MUC2Q02817 5179 aa3.88□□□□□ -1.79
GTF3C4-201ENST00000372146 FAT4Q6V0I7 4981 aa3.87□□□□□ -1.79
GTF3C4-201ENST00000372146 KRTAP9-6A8MVA2 160 aa3.85□□□□□ -1.79
GTF3C4-201ENST00000372146 KRTAP9-4Q9BYQ2 154 aa3.83□□□□□ -1.8
GTF3C4-201ENST00000372146 ABCA13Q86UQ4 5058 aa3.8□□□□□ -1.8
GTF3C4-201ENST00000372146 UBR4Q5T4S7 5183 aa3.78□□□□□ -1.8
GTF3C4-201ENST00000372146 KRTAP9-6A0A140TA67 174 aa3.76□□□□□ -1.81
GTF3C4-201ENST00000372146 RNF213Q63HN8 5207 aa3.74□□□□□ -1.81
GTF3C4-201ENST00000372146 KRTAP4-11Q9BYQ6 195 aa3.7□□□□□ -1.82
GTF3C4-201ENST00000372146 KRTAP20-1Q3LI63 56 aa3.64□□□□□ -1.83
GTF3C4-201ENST00000372146 KRTAP6-3Q3LI67 103 aa3.59□□□□□ -1.83
GTF3C4-201ENST00000372146 SYNE1Q8NF91 8797 aaKnown RBP3.58□□□□□ -1.84
GTF3C4-201ENST00000372146 KMT2DO14686 5537 aa3.56□□□□□ -1.84
GTF3C4-201ENST00000372146 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.52□□□□□ -1.85
GTF3C4-201ENST00000372146 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
GTF3C4-201ENST00000372146 KRTAP20-2Q3LI61 65 aa3.4□□□□□ -1.86
GTF3C4-201ENST00000372146 OBSCNQ5VST9 7968 aa3.34□□□□□ -1.88
GTF3C4-201ENST00000372146 FCGBPQ9Y6R7 5405 aaPredicted RBP3.31□□□□□ -1.88
GTF3C4-201ENST00000372146 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
GTF3C4-201ENST00000372146 DSTQ03001 7570 aaKnown RBP3.26□□□□□ -1.89
GTF3C4-201ENST00000372146 KRTAP5-9P26371 169 aa3.13□□□□□ -1.91
GTF3C4-201ENST00000372146 KRTAP4-6Q9BYQ5 205 aa3.13□□□□□ -1.91
GTF3C4-201ENST00000372146 USH2AO75445 5202 aa3.12□□□□□ -1.91
GTF3C4-201ENST00000372146 MACF1Q9UPN3 7388 aaKnown RBP3.11□□□□□ -1.91
GTF3C4-201ENST00000372146 SSPOA2VEC9 5147 aa3.03□□□□□ -1.92
GTF3C4-201ENST00000372146 MUC12Q9UKN1 5478 aa3.01□□□□□ -1.93
GTF3C4-201ENST00000372146 KRTAP4-12Q9BQ66 201 aa3.01□□□□□ -1.93
GTF3C4-201ENST00000372146 KRTAP4-2Q9BYR5 136 aa3.01□□□□□ -1.93
GTF3C4-201ENST00000372146 KRTAP5-5Q701N2 237 aaPredicted RBP2.98□□□□□ -1.93
GTF3C4-201ENST00000372146 NEBP20929 6669 aa2.9□□□□□ -1.94
GTF3C4-201ENST00000372146 KRTAP5-4Q6L8H1 288 aa2.78□□□□□ -1.96
GTF3C4-201ENST00000372146 MUC19Q7Z5P9 8384 aa2.61□□□□□ -1.99
GTF3C4-201ENST00000372146 MDN1Q9NU22 5596 aa2.56□□□□□ -2
GTF3C4-201ENST00000372146 KRTAP5-3Q6L8H2 238 aa2.39□□□□□ -2.03
GTF3C4-201ENST00000372146 MUC5ACP98088 5654 aa2.34□□□□□ -2.04
GTF3C4-201ENST00000372146 KRTAP5-2Q701N4 177 aa2.27□□□□□ -2.05
GTF3C4-201ENST00000372146 KRTAP5-10Q6L8G5 202 aa2.27□□□□□ -2.05
GTF3C4-201ENST00000372146 KRTAP5-8O75690 187 aa2.22□□□□□ -2.05
GTF3C4-201ENST00000372146 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
GTF3C4-201ENST00000372146 HMCN1Q96RW7 5635 aa2.11□□□□□ -2.07
GTF3C4-201ENST00000372146 GPR98Q8WXG9 6306 aa2.1□□□□□ -2.07
GTF3C4-201ENST00000372146 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
GTF3C4-201ENST00000372146 KRTAP5-1Q6L8H4 278 aa2.01□□□□□ -2.09
GTF3C4-201ENST00000372146 MUC5BQ9HC84 5762 aaPredicted RBP1.99□□□□□ -2.09
GTF3C4-201ENST00000372146 KRTAP5-11Q6L8G4 156 aa1.96□□□□□ -2.1
GTF3C4-201ENST00000372146 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
GTF3C4-201ENST00000372146 AHNAK2Q8IVF2 5795 aa1.89□□□□□ -2.11
GTF3C4-201ENST00000372146 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
GTF3C4-201ENST00000372146 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
GTF3C4-201ENST00000372146 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
GTF3C4-201ENST00000372146 KRTAP5-7Q6L8G8 165 aa1.53□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 7.1 ms