RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 HERC2O95714 4834 aa5.4□□□□□ -1.54
SNX27-202ENST00000368841 LCE5AQ5TCM9 118 aa5.39□□□□□ -1.55
SNX27-202ENST00000368841 KRTAP19-2Q3LHN2 52 aa5.38□□□□□ -1.55
SNX27-202ENST00000368841 KRTAP19-6Q3LI70 58 aa5.37□□□□□ -1.55
SNX27-202ENST00000368841 KMT2CQ8NEZ4 4911 aaKnown RBP5.35□□□□□ -1.55
SNX27-202ENST00000368841 SYNE2Q8WXH0 6885 aaKnown RBP5.35□□□□□ -1.55
SNX27-202ENST00000368841 KIAA1109Q2LD37 5005 aa5.33□□□□□ -1.56
SNX27-202ENST00000368841 KRTAP9-6A0A140TA67 174 aa5.19□□□□□ -1.58
SNX27-202ENST00000368841 PCLOQ9Y6V0 5065 aa5.15□□□□□ -1.58
SNX27-202ENST00000368841 KRTAP20-1Q3LI63 56 aa5.15□□□□□ -1.59
SNX27-202ENST00000368841 BIRC6Q9NR09 4857 aa5.11□□□□□ -1.59
SNX27-202ENST00000368841 KRTAP2-3P0C7H8 128 aa5.11□□□□□ -1.59
SNX27-202ENST00000368841 KRTAP2-4Q9BYR9 128 aa5.11□□□□□ -1.59
SNX27-202ENST00000368841 KRTAP2-1Q9BYU5 128 aa5.11□□□□□ -1.59
SNX27-202ENST00000368841 MT1AP04731 61 aa5.07□□□□□ -1.6
SNX27-202ENST00000368841 KRTAP19-7Q3SYF9 63 aa5.06□□□□□ -1.6
SNX27-202ENST00000368841 LCE1CQ5T751 118 aa5.03□□□□□ -1.6
SNX27-202ENST00000368841 LCE1EQ5T753 118 aa5.03□□□□□ -1.6
SNX27-202ENST00000368841 LCE1FQ5T754 118 aa5.03□□□□□ -1.6
SNX27-202ENST00000368841 LCE1AQ5T7P2 110 aa5.03□□□□□ -1.6
SNX27-202ENST00000368841 KRTAP6-2Q3LI66 62 aa5.02□□□□□ -1.61
SNX27-202ENST00000368841 KRTAP6-1Q3LI64 71 aa4.98□□□□□ -1.61
SNX27-202ENST00000368841 KRTAP9-7A8MTY7 169 aa4.94□□□□□ -1.62
SNX27-202ENST00000368841 FSIP2Q5CZC0 6907 aa4.94□□□□□ -1.62
SNX27-202ENST00000368841 HMCN2Q8NDA2 5059 aa4.91□□□□□ -1.62
SNX27-202ENST00000368841 LCE2AQ5TA79 106 aaPredicted RBP4.85□□□□□ -1.63
SNX27-202ENST00000368841 KRTAP9-4Q9BYQ2 154 aa4.8□□□□□ -1.64
SNX27-202ENST00000368841 KRTAP9-6A8MVA2 160 aa4.75□□□□□ -1.65
SNX27-202ENST00000368841 FAT4Q6V0I7 4981 aa4.71□□□□□ -1.65
SNX27-202ENST00000368841 LCE4AQ5TA78 99 aa4.71□□□□□ -1.66
SNX27-202ENST00000368841 EPPK1P58107 5090 aaKnown RBP4.69□□□□□ -1.66
SNX27-202ENST00000368841 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.68□□□□□ -1.66
SNX27-202ENST00000368841 KRTAP6-3Q3LI67 103 aa4.66□□□□□ -1.66
SNX27-202ENST00000368841 ABCA13Q86UQ4 5058 aa4.61□□□□□ -1.67
SNX27-202ENST00000368841 MUC2Q02817 5179 aa4.59□□□□□ -1.67
SNX27-202ENST00000368841 KRTAP2-2Q9BYT5 123 aa4.54□□□□□ -1.68
SNX27-202ENST00000368841 RNF213Q63HN8 5207 aa4.49□□□□□ -1.69
SNX27-202ENST00000368841 UBR4Q5T4S7 5183 aa4.47□□□□□ -1.69
SNX27-202ENST00000368841 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
SNX27-202ENST00000368841 KRTAP4-11Q9BYQ6 195 aa4.33□□□□□ -1.72
SNX27-202ENST00000368841 OBSCNQ5VST9 7968 aa4.29□□□□□ -1.72
SNX27-202ENST00000368841 SYNE1Q8NF91 8797 aaKnown RBP4.26□□□□□ -1.73
SNX27-202ENST00000368841 KMT2DO14686 5537 aa4.24□□□□□ -1.73
SNX27-202ENST00000368841 KRTAP20-2Q3LI61 65 aa4.23□□□□□ -1.73
SNX27-202ENST00000368841 KRTAP4-4Q9BYR3 166 aa4.22□□□□□ -1.73
SNX27-202ENST00000368841 KRTAP4-6Q9BYQ5 205 aa4.2□□□□□ -1.74
SNX27-202ENST00000368841 KRTAP4-12Q9BQ66 201 aa4.12□□□□□ -1.75
SNX27-202ENST00000368841 KRTAP4-2Q9BYR5 136 aa4.12□□□□□ -1.75
SNX27-202ENST00000368841 FCGBPQ9Y6R7 5405 aaPredicted RBP3.96□□□□□ -1.78
SNX27-202ENST00000368841 DSTQ03001 7570 aaKnown RBP3.9□□□□□ -1.79
SNX27-202ENST00000368841 MACF1Q9UPN3 7388 aaKnown RBP3.89□□□□□ -1.79
SNX27-202ENST00000368841 USH2AO75445 5202 aa3.83□□□□□ -1.8
SNX27-202ENST00000368841 SSPOA2VEC9 5147 aa3.83□□□□□ -1.8
SNX27-202ENST00000368841 NEBP20929 6669 aa3.81□□□□□ -1.8
SNX27-202ENST00000368841 KRTAP5-9P26371 169 aa3.68□□□□□ -1.82
SNX27-202ENST00000368841 KRTAP5-5Q701N2 237 aaPredicted RBP3.51□□□□□ -1.85
SNX27-202ENST00000368841 KRTAP5-4Q6L8H1 288 aa3.49□□□□□ -1.85
SNX27-202ENST00000368841 MUC12Q9UKN1 5478 aa3.43□□□□□ -1.86
SNX27-202ENST00000368841 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
SNX27-202ENST00000368841 MDN1Q9NU22 5596 aa3.05□□□□□ -1.92
SNX27-202ENST00000368841 KRTAP5-3Q6L8H2 238 aa3.04□□□□□ -1.92
SNX27-202ENST00000368841 PHGR1C9JFL3 82 aa2.94□□□□□ -1.94
SNX27-202ENST00000368841 KRTAP5-8O75690 187 aa2.92□□□□□ -1.94
SNX27-202ENST00000368841 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
SNX27-202ENST00000368841 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
SNX27-202ENST00000368841 KRTAP5-2Q701N4 177 aa2.7□□□□□ -1.98
SNX27-202ENST00000368841 HMCN1Q96RW7 5635 aa2.67□□□□□ -1.98
SNX27-202ENST00000368841 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
SNX27-202ENST00000368841 GPR98Q8WXG9 6306 aa2.53□□□□□ -2
SNX27-202ENST00000368841 MUC5BQ9HC84 5762 aaPredicted RBP2.39□□□□□ -2.03
SNX27-202ENST00000368841 KRTAP21-2Q3LI59 83 aa2.27□□□□□ -2.05
SNX27-202ENST00000368841 KRTAP5-11Q6L8G4 156 aa2.26□□□□□ -2.05
SNX27-202ENST00000368841 AHNAK2Q8IVF2 5795 aa2.19□□□□□ -2.06
SNX27-202ENST00000368841 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
SNX27-202ENST00000368841 AHNAKQ09666 5890 aaKnown RBP2.03□□□□□ -2.09
SNX27-202ENST00000368841 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.97□□□□□ -2.09
SNX27-202ENST00000368841 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
SNX27-202ENST00000368841 MUC16Q8WXI7 14507 aa1.76□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 20.5 ms