RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 FAT4Q6V0I7 4981 aa6.02□□□□□ -1.45
CLIP2-202ENST00000361545 RNF213Q63HN8 5207 aa5.97□□□□□ -1.45
CLIP2-202ENST00000361545 LCE2AQ5TA79 106 aaPredicted RBP5.94□□□□□ -1.46
CLIP2-202ENST00000361545 MT1MQ8N339 61 aa5.92□□□□□ -1.46
CLIP2-202ENST00000361545 MT4P47944 62 aa5.91□□□□□ -1.46
CLIP2-202ENST00000361545 LCE3EQ5T5B0 92 aa5.9□□□□□ -1.47
CLIP2-202ENST00000361545 SYNE1Q8NF91 8797 aaKnown RBP5.88□□□□□ -1.47
CLIP2-202ENST00000361545 KRTAP4-3Q9BYR4 195 aa5.84□□□□□ -1.48
CLIP2-202ENST00000361545 KRTAP9-6A0A140TA67 174 aa5.83□□□□□ -1.48
CLIP2-202ENST00000361545 LOC100996750A0A140TA64 210 aa5.82□□□□□ -1.48
CLIP2-202ENST00000361545 HMCN2Q8NDA2 5059 aa5.77□□□□□ -1.49
CLIP2-202ENST00000361545 MUC2Q02817 5179 aa5.77□□□□□ -1.49
CLIP2-202ENST00000361545 MT3P25713 68 aa5.71□□□□□ -1.49
CLIP2-202ENST00000361545 KRTAP19-7Q3SYF9 63 aa5.65□□□□□ -1.5
CLIP2-202ENST00000361545 SYNE2Q8WXH0 6885 aaKnown RBP5.6□□□□□ -1.51
CLIP2-202ENST00000361545 LCE1BQ5T7P3 118 aa5.54□□□□□ -1.52
CLIP2-202ENST00000361545 LCE1DQ5T752 114 aa5.53□□□□□ -1.52
CLIP2-202ENST00000361545 KRTAP9-7A8MTY7 169 aa5.51□□□□□ -1.53
CLIP2-202ENST00000361545 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
CLIP2-202ENST00000361545 PRM1P04553 51 aa5.45□□□□□ -1.54
CLIP2-202ENST00000361545 MT1AP04731 61 aa5.43□□□□□ -1.54
CLIP2-202ENST00000361545 KRTAP6-3Q3LI67 103 aa5.37□□□□□ -1.55
CLIP2-202ENST00000361545 KRTAP4-9Q9BYQ8 210 aa5.35□□□□□ -1.55
CLIP2-202ENST00000361545 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.33□□□□□ -1.56
CLIP2-202ENST00000361545 OBSCNQ5VST9 7968 aa5.31□□□□□ -1.56
CLIP2-202ENST00000361545 KRTAP2-3P0C7H8 128 aa5.31□□□□□ -1.56
CLIP2-202ENST00000361545 KRTAP2-4Q9BYR9 128 aa5.31□□□□□ -1.56
CLIP2-202ENST00000361545 KRTAP2-1Q9BYU5 128 aa5.31□□□□□ -1.56
CLIP2-202ENST00000361545 LCE1AQ5T7P2 110 aa5.29□□□□□ -1.56
CLIP2-202ENST00000361545 LCE5AQ5TCM9 118 aa5.18□□□□□ -1.58
CLIP2-202ENST00000361545 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
CLIP2-202ENST00000361545 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
CLIP2-202ENST00000361545 KRTAP9-6A8MVA2 160 aa5.1□□□□□ -1.59
CLIP2-202ENST00000361545 USH2AO75445 5202 aa5.1□□□□□ -1.59
CLIP2-202ENST00000361545 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
CLIP2-202ENST00000361545 FCGBPQ9Y6R7 5405 aaPredicted RBP5.05□□□□□ -1.6
CLIP2-202ENST00000361545 LCE4AQ5TA78 99 aa5.03□□□□□ -1.6
CLIP2-202ENST00000361545 KRTAP9-4Q9BYQ2 154 aa5.03□□□□□ -1.6
CLIP2-202ENST00000361545 DSTQ03001 7570 aaKnown RBP5.01□□□□□ -1.61
CLIP2-202ENST00000361545 MACF1Q9UPN3 7388 aaKnown RBP4.85□□□□□ -1.63
CLIP2-202ENST00000361545 KMT2DO14686 5537 aa4.84□□□□□ -1.63
CLIP2-202ENST00000361545 NEBP20929 6669 aa4.7□□□□□ -1.66
CLIP2-202ENST00000361545 LCE1CQ5T751 118 aa4.69□□□□□ -1.66
CLIP2-202ENST00000361545 LCE1EQ5T753 118 aa4.69□□□□□ -1.66
CLIP2-202ENST00000361545 LCE1FQ5T754 118 aa4.69□□□□□ -1.66
CLIP2-202ENST00000361545 SSPOA2VEC9 5147 aa4.61□□□□□ -1.67
CLIP2-202ENST00000361545 KRTAP5-9P26371 169 aa4.58□□□□□ -1.68
CLIP2-202ENST00000361545 MUC12Q9UKN1 5478 aa4.55□□□□□ -1.68
CLIP2-202ENST00000361545 MDN1Q9NU22 5596 aa4.49□□□□□ -1.69
CLIP2-202ENST00000361545 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
CLIP2-202ENST00000361545 KRTAP9-9Q9BYP9 154 aa4.43□□□□□ -1.7
CLIP2-202ENST00000361545 KRTAP20-2Q3LI61 65 aa4.31□□□□□ -1.72
CLIP2-202ENST00000361545 MUC19Q7Z5P9 8384 aa4.21□□□□□ -1.74
CLIP2-202ENST00000361545 GPR98Q8WXG9 6306 aa4.18□□□□□ -1.74
CLIP2-202ENST00000361545 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
CLIP2-202ENST00000361545 KRTAP5-4Q6L8H1 288 aa3.96□□□□□ -1.77
CLIP2-202ENST00000361545 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
CLIP2-202ENST00000361545 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
CLIP2-202ENST00000361545 KRTAP4-4Q9BYR3 166 aa3.92□□□□□ -1.78
CLIP2-202ENST00000361545 KRTAP5-5Q701N2 237 aaPredicted RBP3.77□□□□□ -1.81
CLIP2-202ENST00000361545 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
CLIP2-202ENST00000361545 KRTAP5-3Q6L8H2 238 aa3.59□□□□□ -1.83
CLIP2-202ENST00000361545 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
CLIP2-202ENST00000361545 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
CLIP2-202ENST00000361545 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
CLIP2-202ENST00000361545 KRTAP5-2Q701N4 177 aa3.09□□□□□ -1.91
CLIP2-202ENST00000361545 KRTAP5-10Q6L8G5 202 aa3□□□□□ -1.93
CLIP2-202ENST00000361545 AHNAKQ09666 5890 aaKnown RBP2.94□□□□□ -1.94
CLIP2-202ENST00000361545 PHGR1C9JFL3 82 aa2.94□□□□□ -1.94
CLIP2-202ENST00000361545 MUC5BQ9HC84 5762 aaPredicted RBP2.93□□□□□ -1.94
CLIP2-202ENST00000361545 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.97
CLIP2-202ENST00000361545 KRTAP5-11Q6L8G4 156 aa2.76□□□□□ -1.97
CLIP2-202ENST00000361545 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
CLIP2-202ENST00000361545 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.38□□□□□ -2.03
CLIP2-202ENST00000361545 KRTAP21-1Q3LI58 79 aa2.38□□□□□ -2.03
CLIP2-202ENST00000361545 KRTAP5-7Q6L8G8 165 aa2.36□□□□□ -2.03
CLIP2-202ENST00000361545 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 60 ms