RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 MDN1Q9NU22 5596 aa2.99□□□□□ -1.93
CUX1-203ENST00000360264 MT4P47944 62 aa2.98□□□□□ -1.93
CUX1-203ENST00000360264 MT1MQ8N339 61 aa2.97□□□□□ -1.93
CUX1-203ENST00000360264 USH2AO75445 5202 aa2.97□□□□□ -1.93
CUX1-203ENST00000360264 MUC2Q02817 5179 aa2.94□□□□□ -1.94
CUX1-203ENST00000360264 PRM1P04553 51 aa2.94□□□□□ -1.94
CUX1-203ENST00000360264 KRTAP19-6Q3LI70 58 aa2.94□□□□□ -1.94
CUX1-203ENST00000360264 LCE1DQ5T752 114 aa2.93□□□□□ -1.94
CUX1-203ENST00000360264 KRTAP9-2Q9BYQ4 174 aa2.93□□□□□ -1.94
CUX1-203ENST00000360264 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
CUX1-203ENST00000360264 KRTAP4-7Q9BYR0 210 aa2.85□□□□□ -1.95
CUX1-203ENST00000360264 MT1AP04731 61 aa2.84□□□□□ -1.95
CUX1-203ENST00000360264 KRTAP17-1Q9BYP8 105 aa2.83□□□□□ -1.96
CUX1-203ENST00000360264 KRTAP19-2Q3LHN2 52 aa2.81□□□□□ -1.96
CUX1-203ENST00000360264 KRTAP20-1Q3LI63 56 aa2.79□□□□□ -1.96
CUX1-203ENST00000360264 GPR98Q8WXG9 6306 aa2.79□□□□□ -1.96
CUX1-203ENST00000360264 KMT2DO14686 5537 aa2.78□□□□□ -1.96
CUX1-203ENST00000360264 LOC100996750A0A140TA64 210 aa2.78□□□□□ -1.97
CUX1-203ENST00000360264 KRTAP9-6A0A140TA67 174 aa2.77□□□□□ -1.97
CUX1-203ENST00000360264 SYNE2Q8WXH0 6885 aaKnown RBP2.76□□□□□ -1.97
CUX1-203ENST00000360264 LCE1AQ5T7P2 110 aa2.76□□□□□ -1.97
CUX1-203ENST00000360264 FSIP2Q5CZC0 6907 aa2.75□□□□□ -1.97
CUX1-203ENST00000360264 LCE5AQ5TCM9 118 aa2.74□□□□□ -1.97
CUX1-203ENST00000360264 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
CUX1-203ENST00000360264 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
CUX1-203ENST00000360264 KRTAP2-1Q9BYU5 128 aa2.74□□□□□ -1.97
CUX1-203ENST00000360264 FCGBPQ9Y6R7 5405 aaPredicted RBP2.73□□□□□ -1.97
CUX1-203ENST00000360264 LCE4AQ5TA78 99 aa2.71□□□□□ -1.98
CUX1-203ENST00000360264 LCE1CQ5T751 118 aa2.66□□□□□ -1.98
CUX1-203ENST00000360264 LCE1EQ5T753 118 aa2.66□□□□□ -1.98
CUX1-203ENST00000360264 LCE1FQ5T754 118 aa2.66□□□□□ -1.98
CUX1-203ENST00000360264 KRTAP4-3Q9BYR4 195 aa2.66□□□□□ -1.98
CUX1-203ENST00000360264 KRTAP19-7Q3SYF9 63 aa2.65□□□□□ -1.98
CUX1-203ENST00000360264 KRTAP6-3Q3LI67 103 aa2.64□□□□□ -1.99
CUX1-203ENST00000360264 NEBP20929 6669 aa2.63□□□□□ -1.99
CUX1-203ENST00000360264 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
CUX1-203ENST00000360264 LCE2AQ5TA79 106 aaPredicted RBP2.62□□□□□ -1.99
CUX1-203ENST00000360264 KRTAP9-4Q9BYQ2 154 aa2.6□□□□□ -1.99
CUX1-203ENST00000360264 KRTAP9-7A8MTY7 169 aa2.58□□□□□ -2
CUX1-203ENST00000360264 KRTAP6-1Q3LI64 71 aa2.57□□□□□ -2
CUX1-203ENST00000360264 KRTAP4-9Q9BYQ8 210 aa2.57□□□□□ -2
CUX1-203ENST00000360264 KRTAP2-2Q9BYT5 123 aa2.54□□□□□ -2
CUX1-203ENST00000360264 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
CUX1-203ENST00000360264 SSPOA2VEC9 5147 aa2.54□□□□□ -2
CUX1-203ENST00000360264 KRTAP9-9Q9BYP9 154 aa2.51□□□□□ -2.01
CUX1-203ENST00000360264 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.48□□□□□ -2.01
CUX1-203ENST00000360264 OBSCNQ5VST9 7968 aa2.39□□□□□ -2.03
CUX1-203ENST00000360264 MUC5ACP98088 5654 aa2.36□□□□□ -2.03
CUX1-203ENST00000360264 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
CUX1-203ENST00000360264 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
CUX1-203ENST00000360264 HMCN1Q96RW7 5635 aa2.28□□□□□ -2.05
CUX1-203ENST00000360264 SYNE1Q8NF91 8797 aaKnown RBP2.27□□□□□ -2.05
CUX1-203ENST00000360264 MACF1Q9UPN3 7388 aaKnown RBP2.22□□□□□ -2.05
CUX1-203ENST00000360264 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
CUX1-203ENST00000360264 KRTAP5-9P26371 169 aa2.15□□□□□ -2.07
CUX1-203ENST00000360264 KRTAP20-2Q3LI61 65 aa2.15□□□□□ -2.07
CUX1-203ENST00000360264 KRTAP4-11Q9BYQ6 195 aa2.13□□□□□ -2.07
CUX1-203ENST00000360264 KRTAP4-4Q9BYR3 166 aa2.02□□□□□ -2.09
CUX1-203ENST00000360264 KRTAP5-4Q6L8H1 288 aa2.02□□□□□ -2.09
CUX1-203ENST00000360264 KRTAP4-6Q9BYQ5 205 aa2.01□□□□□ -2.09
CUX1-203ENST00000360264 KRTAP4-12Q9BQ66 201 aa1.95□□□□□ -2.1
CUX1-203ENST00000360264 KRTAP4-2Q9BYR5 136 aa1.95□□□□□ -2.1
CUX1-203ENST00000360264 AHNAKQ09666 5890 aaKnown RBP1.89□□□□□ -2.11
CUX1-203ENST00000360264 KRTAP5-5Q701N2 237 aaPredicted RBP1.77□□□□□ -2.13
CUX1-203ENST00000360264 KRTAP5-3Q6L8H2 238 aa1.74□□□□□ -2.13
CUX1-203ENST00000360264 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
CUX1-203ENST00000360264 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
CUX1-203ENST00000360264 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
CUX1-203ENST00000360264 KRTAP5-2Q701N4 177 aa1.44□□□□□ -2.18
CUX1-203ENST00000360264 KRTAP5-10Q6L8G5 202 aa1.42□□□□□ -2.18
CUX1-203ENST00000360264 KRTAP5-11Q6L8G4 156 aa1.41□□□□□ -2.18
CUX1-203ENST00000360264 KRTAP5-1Q6L8H4 278 aa1.3□□□□□ -2.2
CUX1-203ENST00000360264 KRTAP21-2Q3LI59 83 aa1.19□□□□□ -2.22
CUX1-203ENST00000360264 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.19□□□□□ -2.22
CUX1-203ENST00000360264 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
CUX1-203ENST00000360264 KRTAP21-1Q3LI58 79 aa1.15□□□□□ -2.22
CUX1-203ENST00000360264 KRTAP5-7Q6L8G8 165 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 12.9 ms