RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 KRTAP4-3Q9BYR4 195 aa4.41□□□□□ -1.7
CHD4-201ENST00000357008 PKHD1P08F94 4074 aa4.39□□□□□ -1.71
CHD4-201ENST00000357008 KRTAP19-7Q3SYF9 63 aa4.36□□□□□ -1.71
CHD4-201ENST00000357008 KRTAP2-3P0C7H8 128 aa4.36□□□□□ -1.71
CHD4-201ENST00000357008 KRTAP2-4Q9BYR9 128 aa4.36□□□□□ -1.71
CHD4-201ENST00000357008 KRTAP2-1Q9BYU5 128 aa4.36□□□□□ -1.71
CHD4-201ENST00000357008 TNXBP22105 4242 aa4.34□□□□□ -1.72
CHD4-201ENST00000357008 MT1AP04731 61 aa4.31□□□□□ -1.72
CHD4-201ENST00000357008 MT4P47944 62 aa4.31□□□□□ -1.72
CHD4-201ENST00000357008 ABCA13Q86UQ4 5058 aa4.29□□□□□ -1.72
CHD4-201ENST00000357008 LCE1BQ5T7P3 118 aa4.27□□□□□ -1.73
CHD4-201ENST00000357008 LCE1DQ5T752 114 aa4.25□□□□□ -1.73
CHD4-201ENST00000357008 KRTAP4-9Q9BYQ8 210 aa4.21□□□□□ -1.74
CHD4-201ENST00000357008 UBR4Q5T4S7 5183 aa4.14□□□□□ -1.75
CHD4-201ENST00000357008 HMCN2Q8NDA2 5059 aa4.13□□□□□ -1.75
CHD4-201ENST00000357008 RNF213Q63HN8 5207 aa4.12□□□□□ -1.75
CHD4-201ENST00000357008 LCE2AQ5TA79 106 aaPredicted RBP4.11□□□□□ -1.75
CHD4-201ENST00000357008 FAT4Q6V0I7 4981 aa4.09□□□□□ -1.76
CHD4-201ENST00000357008 KRTAP9-6A8MVA2 160 aa4.08□□□□□ -1.76
CHD4-201ENST00000357008 KRTAP9-2Q9BYQ4 174 aa4.07□□□□□ -1.76
CHD4-201ENST00000357008 OBSCNQ5VST9 7968 aa4.03□□□□□ -1.76
CHD4-201ENST00000357008 KRTAP6-2Q3LI66 62 aa4.01□□□□□ -1.77
CHD4-201ENST00000357008 KRTAP6-1Q3LI64 71 aa4.01□□□□□ -1.77
CHD4-201ENST00000357008 FSIP2Q5CZC0 6907 aa3.97□□□□□ -1.77
CHD4-201ENST00000357008 MUC2Q02817 5179 aa3.96□□□□□ -1.78
CHD4-201ENST00000357008 LCE1AQ5T7P2 110 aa3.96□□□□□ -1.78
CHD4-201ENST00000357008 LCE5AQ5TCM9 118 aa3.96□□□□□ -1.78
CHD4-201ENST00000357008 KRTAP9-4Q9BYQ2 154 aa3.94□□□□□ -1.78
CHD4-201ENST00000357008 SYNE2Q8WXH0 6885 aaKnown RBP3.88□□□□□ -1.79
CHD4-201ENST00000357008 KRTAP9-7A8MTY7 169 aa3.85□□□□□ -1.79
CHD4-201ENST00000357008 KRTAP9-6A0A140TA67 174 aa3.78□□□□□ -1.8
CHD4-201ENST00000357008 KRTAP6-3Q3LI67 103 aa3.76□□□□□ -1.81
CHD4-201ENST00000357008 LCE4AQ5TA78 99 aa3.75□□□□□ -1.81
CHD4-201ENST00000357008 KRTAP20-1Q3LI63 56 aa3.74□□□□□ -1.81
CHD4-201ENST00000357008 KRTAP2-2Q9BYT5 123 aa3.63□□□□□ -1.83
CHD4-201ENST00000357008 FCGBPQ9Y6R7 5405 aaPredicted RBP3.61□□□□□ -1.83
CHD4-201ENST00000357008 USH2AO75445 5202 aa3.59□□□□□ -1.83
CHD4-201ENST00000357008 LCE1CQ5T751 118 aa3.59□□□□□ -1.84
CHD4-201ENST00000357008 LCE1EQ5T753 118 aa3.59□□□□□ -1.84
CHD4-201ENST00000357008 LCE1FQ5T754 118 aa3.59□□□□□ -1.84
CHD4-201ENST00000357008 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.54□□□□□ -1.84
CHD4-201ENST00000357008 DSTQ03001 7570 aaKnown RBP3.45□□□□□ -1.86
CHD4-201ENST00000357008 KRTAP4-11Q9BYQ6 195 aa3.33□□□□□ -1.88
CHD4-201ENST00000357008 KMT2DO14686 5537 aa3.29□□□□□ -1.88
CHD4-201ENST00000357008 MACF1Q9UPN3 7388 aaKnown RBP3.28□□□□□ -1.88
CHD4-201ENST00000357008 MUC19Q7Z5P9 8384 aa3.26□□□□□ -1.89
CHD4-201ENST00000357008 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
CHD4-201ENST00000357008 KRTAP5-9P26371 169 aa3.23□□□□□ -1.89
CHD4-201ENST00000357008 SSPOA2VEC9 5147 aa3.18□□□□□ -1.9
CHD4-201ENST00000357008 KRTAP4-6Q9BYQ5 205 aa3.16□□□□□ -1.9
CHD4-201ENST00000357008 KRTAP20-2Q3LI61 65 aa3.15□□□□□ -1.91
CHD4-201ENST00000357008 NEBP20929 6669 aa3.1□□□□□ -1.91
CHD4-201ENST00000357008 KRTAP5-5Q701N2 237 aaPredicted RBP3.07□□□□□ -1.92
CHD4-201ENST00000357008 MUC12Q9UKN1 5478 aa3.07□□□□□ -1.92
CHD4-201ENST00000357008 MDN1Q9NU22 5596 aa3□□□□□ -1.93
CHD4-201ENST00000357008 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CHD4-201ENST00000357008 KRTAP5-4Q6L8H1 288 aa2.88□□□□□ -1.95
CHD4-201ENST00000357008 KRTAP4-12Q9BQ66 201 aa2.86□□□□□ -1.95
CHD4-201ENST00000357008 KRTAP4-2Q9BYR5 136 aa2.86□□□□□ -1.95
CHD4-201ENST00000357008 GPR98Q8WXG9 6306 aa2.77□□□□□ -1.97
CHD4-201ENST00000357008 MUC5ACP98088 5654 aa2.6□□□□□ -1.99
CHD4-201ENST00000357008 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
CHD4-201ENST00000357008 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
CHD4-201ENST00000357008 KRTAP5-10Q6L8G5 202 aa2.44□□□□□ -2.02
CHD4-201ENST00000357008 AHNAK2Q8IVF2 5795 aa2.35□□□□□ -2.03
CHD4-201ENST00000357008 KRTAP5-2Q701N4 177 aa2.26□□□□□ -2.05
CHD4-201ENST00000357008 KRTAP5-8O75690 187 aa2.26□□□□□ -2.05
CHD4-201ENST00000357008 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.07
CHD4-201ENST00000357008 KRTAP5-1Q6L8H4 278 aa2.11□□□□□ -2.07
CHD4-201ENST00000357008 KRTAP5-11Q6L8G4 156 aa2.1□□□□□ -2.07
CHD4-201ENST00000357008 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
CHD4-201ENST00000357008 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
CHD4-201ENST00000357008 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
CHD4-201ENST00000357008 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
CHD4-201ENST00000357008 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.86□□□□□ -2.11
CHD4-201ENST00000357008 KRTAP5-7Q6L8G8 165 aa1.59□□□□□ -2.16
CHD4-201ENST00000357008 MUC16Q8WXI7 14507 aa1.25□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms