RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 FAT4Q6V0I7 4981 aa4.08□□□□□ -1.76
COLCA1-201ENST00000355430 MT1LQ93083 61 aa4.08□□□□□ -1.76
COLCA1-201ENST00000355430 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
COLCA1-201ENST00000355430 KRTAP9-7A8MTY7 169 aa4.05□□□□□ -1.76
COLCA1-201ENST00000355430 MT1EP04732 61 aa4.04□□□□□ -1.76
COLCA1-201ENST00000355430 UBR4Q5T4S7 5183 aa4.04□□□□□ -1.76
COLCA1-201ENST00000355430 KRTAP20-1Q3LI63 56 aa4□□□□□ -1.77
COLCA1-201ENST00000355430 KRTAP6-3Q3LI67 103 aa3.95□□□□□ -1.78
COLCA1-201ENST00000355430 MT4P47944 62 aa3.94□□□□□ -1.78
COLCA1-201ENST00000355430 LOC100996750A0A140TA64 210 aa3.92□□□□□ -1.78
COLCA1-201ENST00000355430 KRTAP19-7Q3SYF9 63 aa3.92□□□□□ -1.78
COLCA1-201ENST00000355430 MT1MQ8N339 61 aa3.91□□□□□ -1.78
COLCA1-201ENST00000355430 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.89□□□□□ -1.79
COLCA1-201ENST00000355430 KRTAP4-3Q9BYR4 195 aa3.89□□□□□ -1.79
COLCA1-201ENST00000355430 KRTAP2-3P0C7H8 128 aa3.84□□□□□ -1.79
COLCA1-201ENST00000355430 KRTAP2-4Q9BYR9 128 aa3.84□□□□□ -1.79
COLCA1-201ENST00000355430 KRTAP2-1Q9BYU5 128 aa3.84□□□□□ -1.79
COLCA1-201ENST00000355430 KRTAP9-6A8MVA2 160 aa3.83□□□□□ -1.8
COLCA1-201ENST00000355430 LCE3DQ9BYE3 92 aa3.83□□□□□ -1.8
COLCA1-201ENST00000355430 FSIP2Q5CZC0 6907 aa3.81□□□□□ -1.8
COLCA1-201ENST00000355430 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
COLCA1-201ENST00000355430 MT3P25713 68 aa3.79□□□□□ -1.8
COLCA1-201ENST00000355430 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
COLCA1-201ENST00000355430 SYNE2Q8WXH0 6885 aaKnown RBP3.74□□□□□ -1.81
COLCA1-201ENST00000355430 KRTAP2-2Q9BYT5 123 aa3.69□□□□□ -1.82
COLCA1-201ENST00000355430 KRTAP4-9Q9BYQ8 210 aa3.64□□□□□ -1.83
COLCA1-201ENST00000355430 LCE4AQ5TA78 99 aa3.62□□□□□ -1.83
COLCA1-201ENST00000355430 PRM1P04553 51 aa3.62□□□□□ -1.83
COLCA1-201ENST00000355430 MT1AP04731 61 aa3.61□□□□□ -1.83
COLCA1-201ENST00000355430 KMT2DO14686 5537 aa3.58□□□□□ -1.84
COLCA1-201ENST00000355430 LCE1DQ5T752 114 aa3.57□□□□□ -1.84
COLCA1-201ENST00000355430 LCE1BQ5T7P3 118 aa3.55□□□□□ -1.84
COLCA1-201ENST00000355430 LCE5AQ5TCM9 118 aa3.51□□□□□ -1.85
COLCA1-201ENST00000355430 USH2AO75445 5202 aa3.47□□□□□ -1.85
COLCA1-201ENST00000355430 KRTAP6-1Q3LI64 71 aa3.46□□□□□ -1.85
COLCA1-201ENST00000355430 SYNE1Q8NF91 8797 aaKnown RBP3.4□□□□□ -1.87
COLCA1-201ENST00000355430 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
COLCA1-201ENST00000355430 KRTAP5-9P26371 169 aa3.34□□□□□ -1.88
COLCA1-201ENST00000355430 KRTAP6-2Q3LI66 62 aa3.32□□□□□ -1.88
COLCA1-201ENST00000355430 NEBP20929 6669 aa3.31□□□□□ -1.88
COLCA1-201ENST00000355430 FCGBPQ9Y6R7 5405 aaPredicted RBP3.3□□□□□ -1.88
COLCA1-201ENST00000355430 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
COLCA1-201ENST00000355430 DSTQ03001 7570 aaKnown RBP3.2□□□□□ -1.9
COLCA1-201ENST00000355430 MACF1Q9UPN3 7388 aaKnown RBP3.19□□□□□ -1.9
COLCA1-201ENST00000355430 MUC12Q9UKN1 5478 aa3.16□□□□□ -1.9
COLCA1-201ENST00000355430 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
COLCA1-201ENST00000355430 KRTAP9-9Q9BYP9 154 aa3.14□□□□□ -1.91
COLCA1-201ENST00000355430 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
COLCA1-201ENST00000355430 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
COLCA1-201ENST00000355430 LCE1FQ5T754 118 aa3.07□□□□□ -1.92
COLCA1-201ENST00000355430 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
COLCA1-201ENST00000355430 KRTAP4-6Q9BYQ5 205 aa2.98□□□□□ -1.93
COLCA1-201ENST00000355430 KRTAP5-5Q701N2 237 aaPredicted RBP2.93□□□□□ -1.94
COLCA1-201ENST00000355430 GPR98Q8WXG9 6306 aa2.91□□□□□ -1.94
COLCA1-201ENST00000355430 KRTAP5-4Q6L8H1 288 aa2.88□□□□□ -1.95
COLCA1-201ENST00000355430 MDN1Q9NU22 5596 aa2.87□□□□□ -1.95
COLCA1-201ENST00000355430 KRTAP4-11Q9BYQ6 195 aa2.73□□□□□ -1.97
COLCA1-201ENST00000355430 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
COLCA1-201ENST00000355430 KRTAP4-12Q9BQ66 201 aa2.52□□□□□ -2.01
COLCA1-201ENST00000355430 KRTAP4-2Q9BYR5 136 aa2.52□□□□□ -2.01
COLCA1-201ENST00000355430 AHNAK2Q8IVF2 5795 aa2.47□□□□□ -2.01
COLCA1-201ENST00000355430 KRTAP4-4Q9BYR3 166 aa2.4□□□□□ -2.02
COLCA1-201ENST00000355430 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
COLCA1-201ENST00000355430 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
COLCA1-201ENST00000355430 KRTAP5-8O75690 187 aa2.33□□□□□ -2.04
COLCA1-201ENST00000355430 MUC5ACP98088 5654 aa2.3□□□□□ -2.04
COLCA1-201ENST00000355430 KRTAP5-2Q701N4 177 aa2.24□□□□□ -2.05
COLCA1-201ENST00000355430 KRTAP5-10Q6L8G5 202 aa2.23□□□□□ -2.05
COLCA1-201ENST00000355430 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
COLCA1-201ENST00000355430 AHNAKQ09666 5890 aaKnown RBP2.07□□□□□ -2.08
COLCA1-201ENST00000355430 KRTAP5-7Q6L8G8 165 aa2□□□□□ -2.09
COLCA1-201ENST00000355430 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
COLCA1-201ENST00000355430 KRTAP5-11Q6L8G4 156 aa1.96□□□□□ -2.1
COLCA1-201ENST00000355430 KRTAP5-1Q6L8H4 278 aa1.96□□□□□ -2.1
COLCA1-201ENST00000355430 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
COLCA1-201ENST00000355430 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
COLCA1-201ENST00000355430 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.79□□□□□ -2.12
COLCA1-201ENST00000355430 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 59.6 ms