RNA–Protein interactions for RNA: ENST00000345662.5

SPAST-202, Transcript of spastin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SPAST, Length 5,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-202ENST00000345662 SYNE1Q8NF91 8797 aaKnown RBP5.27□□□□□ -1.57
SPAST-202ENST00000345662 ABCA13Q86UQ4 5058 aa5.25□□□□□ -1.57
SPAST-202ENST00000345662 KRTAP4-3Q9BYR4 195 aa5.22□□□□□ -1.57
SPAST-202ENST00000345662 KRTAP19-7Q3SYF9 63 aa5.21□□□□□ -1.58
SPAST-202ENST00000345662 EPPK1P58107 5090 aaKnown RBP5.2□□□□□ -1.58
SPAST-202ENST00000345662 MT3P25713 68 aa5.2□□□□□ -1.58
SPAST-202ENST00000345662 KRTAP19-6Q3LI70 58 aa5.11□□□□□ -1.59
SPAST-202ENST00000345662 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
SPAST-202ENST00000345662 HMCN2Q8NDA2 5059 aa5.09□□□□□ -1.59
SPAST-202ENST00000345662 KRTAP9-6A8MVA2 160 aa5.03□□□□□ -1.6
SPAST-202ENST00000345662 KRTAP4-9Q9BYQ8 210 aa5.03□□□□□ -1.6
SPAST-202ENST00000345662 FAT4Q6V0I7 4981 aa5.02□□□□□ -1.61
SPAST-202ENST00000345662 MT1AP04731 61 aa5.02□□□□□ -1.61
SPAST-202ENST00000345662 RNF213Q63HN8 5207 aa5.01□□□□□ -1.61
SPAST-202ENST00000345662 LCE2DQ5TA82 110 aaPredicted RBP4.95□□□□□ -1.62
SPAST-202ENST00000345662 KRTAP9-2Q9BYQ4 174 aa4.91□□□□□ -1.62
SPAST-202ENST00000345662 LCE2AQ5TA79 106 aaPredicted RBP4.87□□□□□ -1.63
SPAST-202ENST00000345662 KRTAP9-6A0A140TA67 174 aa4.86□□□□□ -1.63
SPAST-202ENST00000345662 LCE1BQ5T7P3 118 aa4.81□□□□□ -1.64
SPAST-202ENST00000345662 MT4P47944 62 aa4.8□□□□□ -1.64
SPAST-202ENST00000345662 LCE1DQ5T752 114 aa4.8□□□□□ -1.64
SPAST-202ENST00000345662 FSIP2Q5CZC0 6907 aa4.78□□□□□ -1.64
SPAST-202ENST00000345662 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
SPAST-202ENST00000345662 OBSCNQ5VST9 7968 aa4.76□□□□□ -1.65
SPAST-202ENST00000345662 KRTAP6-1Q3LI64 71 aa4.73□□□□□ -1.65
SPAST-202ENST00000345662 MUC2Q02817 5179 aa4.73□□□□□ -1.65
SPAST-202ENST00000345662 KRTAP9-7A8MTY7 169 aa4.68□□□□□ -1.66
SPAST-202ENST00000345662 LCE5AQ5TCM9 118 aa4.59□□□□□ -1.68
SPAST-202ENST00000345662 KRTAP9-4Q9BYQ2 154 aa4.59□□□□□ -1.68
SPAST-202ENST00000345662 SYNE2Q8WXH0 6885 aaKnown RBP4.56□□□□□ -1.68
SPAST-202ENST00000345662 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
SPAST-202ENST00000345662 FCGBPQ9Y6R7 5405 aaPredicted RBP4.44□□□□□ -1.7
SPAST-202ENST00000345662 KRTAP20-1Q3LI63 56 aa4.43□□□□□ -1.7
SPAST-202ENST00000345662 KRTAP2-2Q9BYT5 123 aa4.37□□□□□ -1.71
SPAST-202ENST00000345662 USH2AO75445 5202 aa4.37□□□□□ -1.71
SPAST-202ENST00000345662 KRTAP6-3Q3LI67 103 aa4.24□□□□□ -1.73
SPAST-202ENST00000345662 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.21□□□□□ -1.73
SPAST-202ENST00000345662 DSTQ03001 7570 aaKnown RBP4.21□□□□□ -1.74
SPAST-202ENST00000345662 LCE4AQ5TA78 99 aa4.19□□□□□ -1.74
SPAST-202ENST00000345662 KMT2DO14686 5537 aa4.19□□□□□ -1.74
SPAST-202ENST00000345662 KRTAP4-11Q9BYQ6 195 aa3.97□□□□□ -1.77
SPAST-202ENST00000345662 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
SPAST-202ENST00000345662 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
SPAST-202ENST00000345662 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
SPAST-202ENST00000345662 SSPOA2VEC9 5147 aa3.92□□□□□ -1.78
SPAST-202ENST00000345662 MUC12Q9UKN1 5478 aa3.88□□□□□ -1.79
SPAST-202ENST00000345662 KRTAP5-5Q701N2 237 aaPredicted RBP3.86□□□□□ -1.79
SPAST-202ENST00000345662 KRTAP5-9P26371 169 aa3.81□□□□□ -1.8
SPAST-202ENST00000345662 MUC19Q7Z5P9 8384 aa3.81□□□□□ -1.8
SPAST-202ENST00000345662 MACF1Q9UPN3 7388 aaKnown RBP3.79□□□□□ -1.8
SPAST-202ENST00000345662 GPR98Q8WXG9 6306 aa3.75□□□□□ -1.81
SPAST-202ENST00000345662 NEBP20929 6669 aa3.67□□□□□ -1.82
SPAST-202ENST00000345662 KRTAP4-6Q9BYQ5 205 aa3.65□□□□□ -1.82
SPAST-202ENST00000345662 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
SPAST-202ENST00000345662 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
SPAST-202ENST00000345662 KRTAP9-9Q9BYP9 154 aa3.5□□□□□ -1.85
SPAST-202ENST00000345662 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
SPAST-202ENST00000345662 KRTAP5-4Q6L8H1 288 aa3.32□□□□□ -1.88
SPAST-202ENST00000345662 KRTAP4-12Q9BQ66 201 aa3.22□□□□□ -1.89
SPAST-202ENST00000345662 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
SPAST-202ENST00000345662 MUC5ACP98088 5654 aa3.11□□□□□ -1.91
SPAST-202ENST00000345662 KRTAP5-10Q6L8G5 202 aa2.99□□□□□ -1.93
SPAST-202ENST00000345662 HMCN1Q96RW7 5635 aa2.97□□□□□ -1.93
SPAST-202ENST00000345662 AHNAK2Q8IVF2 5795 aa2.9□□□□□ -1.95
SPAST-202ENST00000345662 KRTAP5-3Q6L8H2 238 aa2.9□□□□□ -1.95
SPAST-202ENST00000345662 KRTAP5-2Q701N4 177 aa2.76□□□□□ -1.97
SPAST-202ENST00000345662 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
SPAST-202ENST00000345662 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
SPAST-202ENST00000345662 MUC5BQ9HC84 5762 aaPredicted RBP2.5□□□□□ -2.01
SPAST-202ENST00000345662 KRTAP21-1Q3LI58 79 aa2.5□□□□□ -2.01
SPAST-202ENST00000345662 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
SPAST-202ENST00000345662 KRTAP21-2Q3LI59 83 aa2.46□□□□□ -2.02
SPAST-202ENST00000345662 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
SPAST-202ENST00000345662 PHGR1C9JFL3 82 aa2.36□□□□□ -2.03
SPAST-202ENST00000345662 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.28□□□□□ -2.04
SPAST-202ENST00000345662 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
SPAST-202ENST00000345662 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 87.3 ms