RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SSPOA2VEC9 5147 aa1.29□□□□□ -2.2
NEDD4-201ENST00000338963 PKHD1P08F94 4074 aa1.29□□□□□ -2.2
NEDD4-201ENST00000338963 MT1LQ93083 61 aa1.28□□□□□ -2.2
NEDD4-201ENST00000338963 PRM1P04553 51 aa1.28□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP4-9Q9BYQ8 210 aa1.28□□□□□ -2.2
NEDD4-201ENST00000338963 LOC400499M0QZD8 3231 aa1.28□□□□□ -2.21
NEDD4-201ENST00000338963 KRTAP5-4Q6L8H1 288 aa1.27□□□□□ -2.21
NEDD4-201ENST00000338963 LCE3DQ9BYE3 92 aa1.27□□□□□ -2.21
NEDD4-201ENST00000338963 TNXBP22105 4242 aa1.27□□□□□ -2.21
NEDD4-201ENST00000338963 FLGP20930 4061 aaPredicted RBP1.27□□□□□ -2.21
NEDD4-201ENST00000338963 MT1FP04733 61 aa1.27□□□□□ -2.21
NEDD4-201ENST00000338963 KRTAP9-7A8MTY7 169 aa1.24□□□□□ -2.21
NEDD4-201ENST00000338963 FRAS1Q86XX4 4008 aa1.23□□□□□ -2.21
NEDD4-201ENST00000338963 USH2AO75445 5202 aa1.23□□□□□ -2.21
NEDD4-201ENST00000338963 CRCT1Q9UGL9 99 aa1.23□□□□□ -2.21
NEDD4-201ENST00000338963 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
NEDD4-201ENST00000338963 OBSCNQ5VST9 7968 aa1.22□□□□□ -2.21
NEDD4-201ENST00000338963 PKD1L1Q8TDX9 2849 aa1.22□□□□□ -2.21
NEDD4-201ENST00000338963 MT1HP80294 61 aa1.22□□□□□ -2.21
NEDD4-201ENST00000338963 KRTAP4-11Q9BYQ6 195 aa1.22□□□□□ -2.21
NEDD4-201ENST00000338963 KMT2AQ03164 3969 aa1.21□□□□□ -2.22
NEDD4-201ENST00000338963 LCE5AQ5TCM9 118 aa1.21□□□□□ -2.22
NEDD4-201ENST00000338963 SPRR2AP35326 72 aa1.21□□□□□ -2.22
NEDD4-201ENST00000338963 KMT2DO14686 5537 aa1.2□□□□□ -2.22
NEDD4-201ENST00000338963 SPRR2FQ96RM1 72 aa1.2□□□□□ -2.22
NEDD4-201ENST00000338963 LCE1DQ5T752 114 aa1.19□□□□□ -2.22
NEDD4-201ENST00000338963 KRTAP9-3Q9BYQ3 159 aa1.19□□□□□ -2.22
NEDD4-201ENST00000338963 KRTAP19-7Q3SYF9 63 aa1.19□□□□□ -2.22
NEDD4-201ENST00000338963 RNF213Q63HN8 5207 aa1.19□□□□□ -2.22
NEDD4-201ENST00000338963 SPRR2BP35325 72 aa1.19□□□□□ -2.22
NEDD4-201ENST00000338963 VPS13BQ7Z7G8 4022 aa1.18□□□□□ -2.22
NEDD4-201ENST00000338963 MT1GP13640 62 aa1.18□□□□□ -2.22
NEDD4-201ENST00000338963 HMCN1Q96RW7 5635 aa1.17□□□□□ -2.22
NEDD4-201ENST00000338963 KRTAP5-9P26371 169 aa1.17□□□□□ -2.22
NEDD4-201ENST00000338963 LCE1EQ5T753 118 aa1.17□□□□□ -2.22
NEDD4-201ENST00000338963 UBR4Q5T4S7 5183 aa1.16□□□□□ -2.22
NEDD4-201ENST00000338963 LCE3BQ5TA77 95 aa1.15□□□□□ -2.23
NEDD4-201ENST00000338963 KRTAP5-5Q701N2 237 aaPredicted RBP1.14□□□□□ -2.23
NEDD4-201ENST00000338963 SPRR2EP22531 72 aa1.14□□□□□ -2.23
NEDD4-201ENST00000338963 KRTAP6-2Q3LI66 62 aa1.13□□□□□ -2.23
NEDD4-201ENST00000338963 SPRR2DP22532 72 aa1.12□□□□□ -2.23
NEDD4-201ENST00000338963 MT1MQ8N339 61 aa1.11□□□□□ -2.23
NEDD4-201ENST00000338963 MUC2Q02817 5179 aa1.1□□□□□ -2.23
NEDD4-201ENST00000338963 KRTAP19-3Q7Z4W3 81 aa1.1□□□□□ -2.23
NEDD4-201ENST00000338963 AHNAKQ09666 5890 aaKnown RBP1.09□□□□□ -2.23
NEDD4-201ENST00000338963 LCE1FQ5T754 118 aa1.09□□□□□ -2.23
NEDD4-201ENST00000338963 GPR98Q8WXG9 6306 aa1.08□□□□□ -2.24
NEDD4-201ENST00000338963 KRTAP20-1Q3LI63 56 aa1.08□□□□□ -2.24
NEDD4-201ENST00000338963 MUC19Q7Z5P9 8384 aa1.05□□□□□ -2.24
NEDD4-201ENST00000338963 SYNE1Q8NF91 8797 aaKnown RBP1.01□□□□□ -2.25
NEDD4-201ENST00000338963 AHNAK2Q8IVF2 5795 aa1.01□□□□□ -2.25
NEDD4-201ENST00000338963 FCGBPQ9Y6R7 5405 aaPredicted RBP1□□□□□ -2.25
NEDD4-201ENST00000338963 MDN1Q9NU22 5596 aa1□□□□□ -2.25
NEDD4-201ENST00000338963 KRTAP6-1Q3LI64 71 aa1□□□□□ -2.25
NEDD4-201ENST00000338963 MUC12Q9UKN1 5478 aa1□□□□□ -2.25
NEDD4-201ENST00000338963 KRTAP5-8O75690 187 aa0.98□□□□□ -2.25
NEDD4-201ENST00000338963 MT4P47944 62 aa0.97□□□□□ -2.25
NEDD4-201ENST00000338963 KRTAP4-3Q9BYR4 195 aa0.97□□□□□ -2.25
NEDD4-201ENST00000338963 NEBP20929 6669 aa0.95□□□□□ -2.26
NEDD4-201ENST00000338963 KRTAP5-11Q6L8G4 156 aa0.94□□□□□ -2.26
NEDD4-201ENST00000338963 KRTAP19-6Q3LI70 58 aa0.93□□□□□ -2.26
NEDD4-201ENST00000338963 KRTAP5-1Q6L8H4 278 aa0.9□□□□□ -2.27
NEDD4-201ENST00000338963 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
NEDD4-201ENST00000338963 KRTAP4-4Q9BYR3 166 aa0.87□□□□□ -2.27
NEDD4-201ENST00000338963 SYNE2Q8WXH0 6885 aaKnown RBP0.85□□□□□ -2.27
NEDD4-201ENST00000338963 LCE1BQ5T7P3 118 aa0.85□□□□□ -2.27
NEDD4-201ENST00000338963 MUC5ACP98088 5654 aa0.84□□□□□ -2.27
NEDD4-201ENST00000338963 LCE1CQ5T751 118 aa0.84□□□□□ -2.27
NEDD4-201ENST00000338963 KRTAP5-10Q6L8G5 202 aa0.83□□□□□ -2.28
NEDD4-201ENST00000338963 FSIP2Q5CZC0 6907 aa0.73□□□□□ -2.29
NEDD4-201ENST00000338963 KRTAP5-7Q6L8G8 165 aa0.7□□□□□ -2.3
NEDD4-201ENST00000338963 MACF1Q9UPN3 7388 aaKnown RBP0.69□□□□□ -2.3
NEDD4-201ENST00000338963 KRTAP20-2Q3LI61 65 aa0.65□□□□□ -2.31
NEDD4-201ENST00000338963 KRTAP21-2Q3LI59 83 aa0.62□□□□□ -2.31
NEDD4-201ENST00000338963 DSTQ03001 7570 aaKnown RBP0.62□□□□□ -2.31
NEDD4-201ENST00000338963 PHGR1C9JFL3 82 aa0.6□□□□□ -2.31
NEDD4-201ENST00000338963 MUC16Q8WXI7 14507 aa0.35□□□□□ -2.35
Retrieved 77 of 20,778 RNA–protein pairs in 22 ms