RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 LCE3EQ5T5B0 92 aa3.25□□□□□ -1.89
CHD3-201ENST00000330494 MT1MQ8N339 61 aa3.2□□□□□ -1.9
CHD3-201ENST00000330494 PRM1P04553 51 aa3.19□□□□□ -1.9
CHD3-201ENST00000330494 LCE1BQ5T7P3 118 aa3.18□□□□□ -1.9
CHD3-201ENST00000330494 KRTAP19-6Q3LI70 58 aa3.17□□□□□ -1.9
CHD3-201ENST00000330494 FSIP2Q5CZC0 6907 aa3.14□□□□□ -1.91
CHD3-201ENST00000330494 HMCN2Q8NDA2 5059 aa3.14□□□□□ -1.91
CHD3-201ENST00000330494 SYNE2Q8WXH0 6885 aaKnown RBP3.13□□□□□ -1.91
CHD3-201ENST00000330494 LCE1DQ5T752 114 aa3.11□□□□□ -1.91
CHD3-201ENST00000330494 LCE2AQ5TA79 106 aaPredicted RBP3.1□□□□□ -1.91
CHD3-201ENST00000330494 KRTAP4-9Q9BYQ8 210 aa3.06□□□□□ -1.92
CHD3-201ENST00000330494 KRTAP9-6A0A140TA67 174 aa3.05□□□□□ -1.92
CHD3-201ENST00000330494 RNF213Q63HN8 5207 aa3.05□□□□□ -1.92
CHD3-201ENST00000330494 MT3P25713 68 aa3.05□□□□□ -1.92
CHD3-201ENST00000330494 FAT4Q6V0I7 4981 aa3.05□□□□□ -1.92
CHD3-201ENST00000330494 KRTAP19-7Q3SYF9 63 aa3.04□□□□□ -1.92
CHD3-201ENST00000330494 LCE5AQ5TCM9 118 aa3.03□□□□□ -1.92
CHD3-201ENST00000330494 MUC2Q02817 5179 aa2.98□□□□□ -1.93
CHD3-201ENST00000330494 KRTAP20-1Q3LI63 56 aa2.97□□□□□ -1.93
CHD3-201ENST00000330494 UBR4Q5T4S7 5183 aa2.92□□□□□ -1.94
CHD3-201ENST00000330494 LCE1CQ5T751 118 aa2.92□□□□□ -1.94
CHD3-201ENST00000330494 LCE1EQ5T753 118 aa2.92□□□□□ -1.94
CHD3-201ENST00000330494 LCE1FQ5T754 118 aa2.92□□□□□ -1.94
CHD3-201ENST00000330494 LCE1AQ5T7P2 110 aa2.92□□□□□ -1.94
CHD3-201ENST00000330494 KRTAP9-7A8MTY7 169 aa2.9□□□□□ -1.95
CHD3-201ENST00000330494 KRTAP2-3P0C7H8 128 aa2.9□□□□□ -1.95
CHD3-201ENST00000330494 KRTAP2-4Q9BYR9 128 aa2.9□□□□□ -1.95
CHD3-201ENST00000330494 KRTAP2-1Q9BYU5 128 aa2.9□□□□□ -1.95
CHD3-201ENST00000330494 MT1AP04731 61 aa2.89□□□□□ -1.95
CHD3-201ENST00000330494 KRTAP6-1Q3LI64 71 aa2.85□□□□□ -1.95
CHD3-201ENST00000330494 KRTAP9-6A8MVA2 160 aa2.83□□□□□ -1.96
CHD3-201ENST00000330494 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
CHD3-201ENST00000330494 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.81□□□□□ -1.96
CHD3-201ENST00000330494 KRTAP6-3Q3LI67 103 aa2.77□□□□□ -1.97
CHD3-201ENST00000330494 SYNE1Q8NF91 8797 aaKnown RBP2.74□□□□□ -1.97
CHD3-201ENST00000330494 KRTAP9-4Q9BYQ2 154 aa2.73□□□□□ -1.97
CHD3-201ENST00000330494 KMT2DO14686 5537 aa2.72□□□□□ -1.97
CHD3-201ENST00000330494 LCE4AQ5TA78 99 aa2.68□□□□□ -1.98
CHD3-201ENST00000330494 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
CHD3-201ENST00000330494 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
CHD3-201ENST00000330494 USH2AO75445 5202 aa2.56□□□□□ -2
CHD3-201ENST00000330494 FCGBPQ9Y6R7 5405 aaPredicted RBP2.56□□□□□ -2
CHD3-201ENST00000330494 DSTQ03001 7570 aaKnown RBP2.52□□□□□ -2.01
CHD3-201ENST00000330494 KRTAP9-9Q9BYP9 154 aa2.5□□□□□ -2.01
CHD3-201ENST00000330494 MACF1Q9UPN3 7388 aaKnown RBP2.47□□□□□ -2.01
CHD3-201ENST00000330494 KRTAP4-6Q9BYQ5 205 aa2.45□□□□□ -2.02
CHD3-201ENST00000330494 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
CHD3-201ENST00000330494 KRTAP20-2Q3LI61 65 aa2.37□□□□□ -2.03
CHD3-201ENST00000330494 KRTAP5-9P26371 169 aa2.36□□□□□ -2.03
CHD3-201ENST00000330494 KRTAP4-11Q9BYQ6 195 aa2.35□□□□□ -2.03
CHD3-201ENST00000330494 MUC12Q9UKN1 5478 aa2.34□□□□□ -2.04
CHD3-201ENST00000330494 KRTAP4-4Q9BYR3 166 aa2.3□□□□□ -2.04
CHD3-201ENST00000330494 KRTAP4-12Q9BQ66 201 aa2.27□□□□□ -2.05
CHD3-201ENST00000330494 KRTAP4-2Q9BYR5 136 aa2.27□□□□□ -2.05
CHD3-201ENST00000330494 NEBP20929 6669 aa2.21□□□□□ -2.06
CHD3-201ENST00000330494 KRTAP5-4Q6L8H1 288 aa2.09□□□□□ -2.07
CHD3-201ENST00000330494 KRTAP5-5Q701N2 237 aaPredicted RBP2.07□□□□□ -2.08
CHD3-201ENST00000330494 MDN1Q9NU22 5596 aa2.02□□□□□ -2.09
CHD3-201ENST00000330494 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
CHD3-201ENST00000330494 KRTAP5-3Q6L8H2 238 aa1.86□□□□□ -2.11
CHD3-201ENST00000330494 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
CHD3-201ENST00000330494 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
CHD3-201ENST00000330494 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
CHD3-201ENST00000330494 GPR98Q8WXG9 6306 aa1.67□□□□□ -2.14
CHD3-201ENST00000330494 HMCN1Q96RW7 5635 aa1.66□□□□□ -2.14
CHD3-201ENST00000330494 KRTAP5-10Q6L8G5 202 aa1.62□□□□□ -2.15
CHD3-201ENST00000330494 KRTAP5-2Q701N4 177 aa1.61□□□□□ -2.15
CHD3-201ENST00000330494 AHNAK2Q8IVF2 5795 aa1.53□□□□□ -2.16
CHD3-201ENST00000330494 KRTAP5-1Q6L8H4 278 aa1.5□□□□□ -2.17
CHD3-201ENST00000330494 MUC5BQ9HC84 5762 aaPredicted RBP1.43□□□□□ -2.18
CHD3-201ENST00000330494 KRTAP5-11Q6L8G4 156 aa1.42□□□□□ -2.18
CHD3-201ENST00000330494 KRTAP21-2Q3LI59 83 aa1.42□□□□□ -2.18
CHD3-201ENST00000330494 AHNAKQ09666 5890 aaKnown RBP1.32□□□□□ -2.2
CHD3-201ENST00000330494 KRTAP21-1Q3LI58 79 aa1.3□□□□□ -2.2
CHD3-201ENST00000330494 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.2□□□□□ -2.22
CHD3-201ENST00000330494 KRTAP5-7Q6L8G8 165 aa1.16□□□□□ -2.22
CHD3-201ENST00000330494 MUC16Q8WXI7 14507 aa1.01□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 12.2 ms