RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 MT1EP04732 61 aa2.43□□□□□ -2.02
CIITA-201ENST00000324288 RNF213Q63HN8 5207 aa2.42□□□□□ -2.02
CIITA-201ENST00000324288 MT1MQ8N339 61 aa2.39□□□□□ -2.03
CIITA-201ENST00000324288 HERC1Q15751 4861 aa2.39□□□□□ -2.03
CIITA-201ENST00000324288 EPPK1P58107 5090 aaKnown RBP2.37□□□□□ -2.03
CIITA-201ENST00000324288 KIAA1109Q2LD37 5005 aa2.36□□□□□ -2.03
CIITA-201ENST00000324288 LCE5AQ5TCM9 118 aa2.32□□□□□ -2.04
CIITA-201ENST00000324288 SYNE2Q8WXH0 6885 aaKnown RBP2.3□□□□□ -2.04
CIITA-201ENST00000324288 UBR4Q5T4S7 5183 aa2.29□□□□□ -2.04
CIITA-201ENST00000324288 KRTAP9-2Q9BYQ4 174 aa2.29□□□□□ -2.04
CIITA-201ENST00000324288 ABCA13Q86UQ4 5058 aa2.26□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP19-6Q3LI70 58 aa2.25□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP9-6A0A140TA67 174 aa2.25□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP6-2Q3LI66 62 aa2.24□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP19-2Q3LHN2 52 aa2.23□□□□□ -2.05
CIITA-201ENST00000324288 MUC12Q9UKN1 5478 aa2.22□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP2-3P0C7H8 128 aa2.22□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP2-4Q9BYR9 128 aa2.22□□□□□ -2.05
CIITA-201ENST00000324288 KRTAP2-1Q9BYU5 128 aa2.22□□□□□ -2.05
CIITA-201ENST00000324288 LCE1CQ5T751 118 aa2.21□□□□□ -2.06
CIITA-201ENST00000324288 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
CIITA-201ENST00000324288 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
CIITA-201ENST00000324288 LCE1AQ5T7P2 110 aa2.21□□□□□ -2.06
CIITA-201ENST00000324288 KRTAP9-7A8MTY7 169 aa2.21□□□□□ -2.06
CIITA-201ENST00000324288 MT1AP04731 61 aa2.18□□□□□ -2.06
CIITA-201ENST00000324288 KRTAP20-1Q3LI63 56 aa2.17□□□□□ -2.06
CIITA-201ENST00000324288 KRTAP6-1Q3LI64 71 aa2.14□□□□□ -2.07
CIITA-201ENST00000324288 KRTAP19-7Q3SYF9 63 aa2.13□□□□□ -2.07
CIITA-201ENST00000324288 FSIP2Q5CZC0 6907 aa2.13□□□□□ -2.07
CIITA-201ENST00000324288 KRTAP9-6A8MVA2 160 aa2.11□□□□□ -2.07
CIITA-201ENST00000324288 FAT4Q6V0I7 4981 aa2.09□□□□□ -2.07
CIITA-201ENST00000324288 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
CIITA-201ENST00000324288 MUC2Q02817 5179 aa2.08□□□□□ -2.08
CIITA-201ENST00000324288 LCE4AQ5TA78 99 aa2.07□□□□□ -2.08
CIITA-201ENST00000324288 USH2AO75445 5202 aa2.06□□□□□ -2.08
CIITA-201ENST00000324288 KRTAP2-2Q9BYT5 123 aa2.03□□□□□ -2.08
CIITA-201ENST00000324288 DSTQ03001 7570 aaKnown RBP2.02□□□□□ -2.09
CIITA-201ENST00000324288 KRTAP9-4Q9BYQ2 154 aa2.02□□□□□ -2.09
CIITA-201ENST00000324288 SYNE1Q8NF91 8797 aaKnown RBP2□□□□□ -2.09
CIITA-201ENST00000324288 KRTAP4-11Q9BYQ6 195 aa1.98□□□□□ -2.09
CIITA-201ENST00000324288 LCE2AQ5TA79 106 aaPredicted RBP1.95□□□□□ -2.1
CIITA-201ENST00000324288 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.94□□□□□ -2.1
CIITA-201ENST00000324288 KRTAP6-3Q3LI67 103 aa1.92□□□□□ -2.1
CIITA-201ENST00000324288 MDN1Q9NU22 5596 aa1.9□□□□□ -2.11
CIITA-201ENST00000324288 GPR98Q8WXG9 6306 aa1.9□□□□□ -2.11
CIITA-201ENST00000324288 KMT2DO14686 5537 aa1.89□□□□□ -2.11
CIITA-201ENST00000324288 FCGBPQ9Y6R7 5405 aaPredicted RBP1.88□□□□□ -2.11
CIITA-201ENST00000324288 KRTAP9-9Q9BYP9 154 aa1.87□□□□□ -2.11
CIITA-201ENST00000324288 KRTAP4-4Q9BYR3 166 aa1.86□□□□□ -2.11
CIITA-201ENST00000324288 NEBP20929 6669 aa1.83□□□□□ -2.12
CIITA-201ENST00000324288 KRTAP20-2Q3LI61 65 aa1.82□□□□□ -2.12
CIITA-201ENST00000324288 MACF1Q9UPN3 7388 aaKnown RBP1.81□□□□□ -2.12
CIITA-201ENST00000324288 KRTAP4-12Q9BQ66 201 aa1.77□□□□□ -2.13
CIITA-201ENST00000324288 KRTAP4-2Q9BYR5 136 aa1.77□□□□□ -2.13
CIITA-201ENST00000324288 KRTAP4-6Q9BYQ5 205 aa1.74□□□□□ -2.13
CIITA-201ENST00000324288 SSPOA2VEC9 5147 aa1.68□□□□□ -2.14
CIITA-201ENST00000324288 KRTAP5-5Q701N2 237 aaPredicted RBP1.66□□□□□ -2.14
CIITA-201ENST00000324288 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
CIITA-201ENST00000324288 MUC19Q7Z5P9 8384 aa1.48□□□□□ -2.17
CIITA-201ENST00000324288 MUC5ACP98088 5654 aa1.46□□□□□ -2.18
CIITA-201ENST00000324288 KRTAP5-4Q6L8H1 288 aa1.46□□□□□ -2.18
CIITA-201ENST00000324288 HMCN1Q96RW7 5635 aa1.41□□□□□ -2.18
CIITA-201ENST00000324288 MUC5BQ9HC84 5762 aaPredicted RBP1.34□□□□□ -2.19
CIITA-201ENST00000324288 AHNAK2Q8IVF2 5795 aa1.29□□□□□ -2.2
CIITA-201ENST00000324288 KRTAP5-2Q701N4 177 aa1.26□□□□□ -2.21
CIITA-201ENST00000324288 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
CIITA-201ENST00000324288 KRTAP5-3Q6L8H2 238 aa1.25□□□□□ -2.21
CIITA-201ENST00000324288 KRTAP5-8O75690 187 aa1.2□□□□□ -2.22
CIITA-201ENST00000324288 KRTAP5-10Q6L8G5 202 aa1.14□□□□□ -2.23
CIITA-201ENST00000324288 AHNAKQ09666 5890 aaKnown RBP1.14□□□□□ -2.23
CIITA-201ENST00000324288 KRTAP5-1Q6L8H4 278 aa1.07□□□□□ -2.24
CIITA-201ENST00000324288 KRTAP21-1Q3LI58 79 aa0.98□□□□□ -2.25
CIITA-201ENST00000324288 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.96□□□□□ -2.26
CIITA-201ENST00000324288 KRTAP5-11Q6L8G4 156 aa0.95□□□□□ -2.26
CIITA-201ENST00000324288 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
CIITA-201ENST00000324288 KRTAP5-7Q6L8G8 165 aa0.94□□□□□ -2.26
CIITA-201ENST00000324288 MUC16Q8WXI7 14507 aa0.73□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 122.3 ms